Job Description P76142 Confidence 98.77% Date Thu Jan 5 12:19:35 GMT 2012 Rank 84 Aligned Residues 248 % Identity 17% Template c3ip5A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:abc transporter, substrate binding protein (amino acid); PDBTitle: structure of atu2422-gaba receptor in complex with alanine Resolution 1.35 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		29	30	.	.	.	.	.	.			.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.								.	.	.	.	60	.	.		.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.																				.	.	.	.	.	.	.								.
Query SS confidence										.	.																				.	.	.	.	.	.	.								.
Query Sequence		R	I	A	F	I	P	K	L	.	.	V	G	V	G	F	F	T	S	G	G	N	G	A	Q	Q	A	G	K	E	.	.	.	.	.	.	.	L	G	V	D	V	T	Y	.	D	G	P	T	E	P	S	V	S	G	Q	V	Q	L	I	N	N	F	V	N	Q	G	Y	N	A	I	I	V	S	A	V	S	P	D	G	L
Query Conservation										.	.																				.	.	.	.	.	.	.								.
Alig confidence										.	.																				.	.	.	.	.	.	.								.																										.
Template Conservation																																																																							.
Template Sequence		V	I	A	V	G	A	P	L	T	G	P	N	A	A	F	G	A	Q	I	Q	K	G	A	E	Q	A	A	K	D	I	N	A	A	G	G	I	N	G	E	Q	I	K	I	V	L	G	D	D	V	S	D	P	K	Q	G	I	S	V	A	N	K	F	V	A	D	G	V	K	F	.	V	V	G	H	F	N	S	G	V	S
Template Known Secondary structure										S	S	T	T																					T	T		B	T	T	B										T	T															T	T				.					S	S
Template Predicted Secondary structure																																																																							.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.					.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure																									.	.	.	.
Query SS confidence																									.	.	.	.
Query Sequence		C	P	A	L	K	R	A	M	Q	R	G	V	R	V	L	T	W	D	S	D	T	K	P	.	.	.	.	E	C	R	S	Y	Y	I	N	Q	G	T	P	A	Q	L	G	G	M	L	V	D	M	A	A	R	Q	V	N	K	D	K	A	K	V	A	F	F	Y	S	S	P	T	V	T	D	Q	N	Q	W	V	K	E	A
Query Conservation																									.	.	.	.
Alig confidence																									.	.	.	.																												.	.									.	.
Template Conservation																																																								.	.									.	.
Template Sequence		I	P	A	S	E	V	Y	A	E	N	G	I	L	E	I	T	P	A	A	T	N	P	V	F	T	E	R	G	L	W	N	T	F	R	T	C	G	R	D	D	Q	Q	G	G	I	A	G	K	Y	L	A	D	H	F	.	.	K	D	A	K	V	A	I	I	.	.	H	D	K	T	P	Y	G	Q	G	L	A	D	E	T
Template Known Secondary structure											T	T						S	S				G	G	G	G	S	S			T	T				S	S																			.	.	T	T							.	.			S	S
Template Predicted Secondary structure																																																								.	.									.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.			.	.	.	140	.	.	.	.			.	.	.	.	.	150	.	.	.	.	.	.	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	K	I	A	K	E	H	P	G	W	E	I	V	T	T	Q	F	G	Y	N	D	A	T	K	S	L	Q	T	A	E	G	I	L	K	A	Y	S	D	L	D	A	I	I	A	P	D	A	N	A	L	P	A	A	A	Q	A	A	E	N	L	K	N	D	K	V	A	I	V	G	F	S	T	P	N	V	M	R	P	Y
Query Conservation
Alig confidence													.	.																												.
Template Conservation													.	.																												.
Template Sequence		K	K	A	A	N	A	A	G	V	T	E	.	.	V	M	Y	E	G	V	N	V	G	D	K	D	F	S	A	L	I	S	K	M	K	E	A	G	V	S	I	.	I	Y	W	G	G	L	H	T	E	A	G	L	I	I	R	Q	A	A	D	Q	G	L	K	A	K	L	V	S	G	D	G	I	V	S	N	E	L	A	S
Template Known Secondary structure								T	T				.	.	S							T	T														T	T				.					S															T	T									G	G	G		S	T
Template Predicted Secondary structure													.	.																												.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.			170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		255	.					.	.	.	260	.	.	.	.	.	.																							.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure				.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	E	.	.	.	.	R	G	T	V	K	E	F	G	L	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	V	V	Q	Q	G	K	I	S	V	Y	V	A	D	A	L	L	K
Query Conservation				.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	A	G	D	A	V	E	G	T	L	N	T	F	G	P	D	P	T	L	R	P	E	N	K	E	L	V	E	K	F	K	A	A	G	F	N	P	E	A	Y	T	L	Y	S	Y	A	A	M	Q	A	I	A	G	A	A	K
Template Known Secondary structure				G	G	G	G	T	T						S			G	G	G		G	G	G										T	T					T	T
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions