Job Description P76142 Confidence 98.14% Date Thu Jan 5 12:19:35 GMT 2012 Rank 92 Aligned Residues 209 % Identity 12% Template c3h6hB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:glutamate receptor, ionotropic kainate 2; PDBTitle: crystal structure of the glur6 amino terminal domain dimer assembly2 mpd form Resolution 2.90 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.									.	.	.	60	.	.		.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.							.						.
Query SS confidence																														.	.	.	.	.	.	.	.							.						.
Query Sequence		R	I	A	F	I	P	K	L	V	G	V	G	F	F	T	S	G	G	N	G	A	Q	Q	A	G	K	E	L	.	.	.	.	.	.	.	.	G	V	D	V	T	Y	.	D	G	P	T	E	.	P	S	V	S	G	Q	V	Q	L	I	N	N	F	V	N	Q	G	Y	N	A	I	I	V	S	A	V	S	P	D	G	L
Query Conservation																														.	.	.	.	.	.	.	.							.						.
Alig confidence																														.	.	.	.	.	.	.	.							.						.																							.
Template Conservation																																																																									.
Template Sequence		R	F	G	G	I	F	E	Y	V	E	S	G	P	M	G	A	E	E	L	A	F	R	F	A	V	N	T	I	N	R	N	R	T	L	L	P	N	T	T	L	T	Y	D	T	Q	K	I	N	L	Y	D	S	F	E	A	S	K	K	A	C	D	Q	L	S	L	G	V	A	A	I	F	.	G	P	S	H	S	S	S	A
Template Known Secondary structure											T	T	S	S																			S	S	S	S	S	S												T	T																		S				.			S	S
Template Predicted Secondary structure																																																																									.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.		.	.	.	80	.	.	.	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.				.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure																						.	.	.
Query SS confidence																						.	.	.
Query Sequence		C	P	A	L	K	R	A	M	Q	R	G	V	R	V	L	T	W	D	S	D	.	.	.	T	K	P	E	C	R	S	Y	Y	I	N	Q	G	T	P	A	Q	L	G	G	M	L	V	D	M	A	A	R	Q	V	N	K	D	K	A	K	V	A	F	F	Y	S	S	P	T	V	T	D	Q	N	Q	W	V	K	E	A	K
Query Conservation																						.	.	.
Alig confidence																						.	.	.																														.	.	.										.	.	.
Template Conservation																																																						.	.	.										.	.	.
Template Sequence		N	A	V	Q	S	I	C	N	A	L	G	V	P	H	I	Q	T	R	W	K	H	Q	V	S	D	N	K	D	S	F	Y	V	S	L	Y	P	D	F	S	S	L	S	R	A	I	L	D	L	V	Q	F	F	.	.	.	K	W	K	T	V	T	V	V	Y	.	.	.	D	D	S	T	G	L	I	R	L	Q	E	L	I
Template Known Secondary structure											T	T			B				S						S	S					S					S	B		T	T	T												T	.	.	.	T		S							.	.	.	S	S	T						S
Template Predicted Secondary structure																																																						.	.	.										.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.				.	.	.	140	.	.	.	.	.				.	.	.	.	150	.	.	.	.	.	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.		.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.
Query SS confidence																																																															.
Query Sequence		A	K	I	A	K	E	H	P	G	W	E	I	V	T	T	Q	F	G	Y	N	D	A	T	K	S	L	Q	T	A	E	G	I	L	K	A	Y	S	D	L	D	A	I	I	A	P	D	A	N	A	L	P	A	A	A	Q	A	A	E	N	L	K	.	N	D	K	V	A	I	V	G	F	S	T	P
Query Conservation																																																															.
Alig confidence																							.	.	.																.																						.
Template Conservation																							.	.	.																.
Template Sequence		K	A	P	S	R	Y	N	L	R	L	K	I	R	Q	L	P	A	D	T	K	D	.	.	.	A	K	P	L	L	K	E	M	K	R	G	K	E	F	H	.	V	I	F	D	C	S	H	E	M	A	A	G	I	L	K	Q	A	L	A	M	G	M	M	T	E	Y	Y	H	Y	I	F	T	T	L
Template Known Secondary structure		T	G	G	G	T	S	S										S	S	G	G	G	.	.	.											T	T				.					S																T			S	T	T								S
Template Predicted Secondary structure																							.	.	.																.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.				180	.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions