Job Description P76142 Confidence 99.92% Date Thu Jan 5 12:19:35 GMT 2012 Rank 67 Aligned Residues 228 % Identity 11% Template c3gybB_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulators (laci-family PDBTitle: crystal structure of a laci-family transcriptional2 regulatory protein from corynebacterium glutamicum Resolution 1.60 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	R	I	A	F	I	P	K	L	V	G	V	G	F	F	T	S	G	G	N	G	A	Q	Q	A	G	K	E	L	G	V	D	V	T	Y	D	G	P	T	E	P	S	V	S	G	Q	V	Q	L	I	N	N	F	V	N	Q	G	Y	N	A	I	I	V	S	A	V	S	P	D	G	L	C	P	A	L	K	R	A	M
Query Conservation
Alig confidence																																							.										.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.										.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	Q	L	I	A	V	L	I	D	D	Y	S	N	P	W	F	I	D	L	I	Q	S	L	S	D	V	L	T	P	K	G	Y	R	L	S	V	I	.	D	S	L	T	S	Q	A	G	T	.	D	P	I	T	S	A	L	S	X	R	P	D	G	I	I	I	A	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										S		T	T	S	G	G	G												G	G	G	T							.		S	S	S	S		S	S	S	.								T	T			S							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																							.										.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.		100	.	.	.	.	.	.	.	.		.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	R	G	V	R	V	L	T	W	D	S	D	T	K	P	E	C	R	S	Y	Y	I	N	Q	G	T	P	A	Q	L	G	G	M	L	V	D	M	A	A	R	Q	V	N	K	D	K	A	K	V	A	F	F	Y	S	S	P	T	V	T	D	Q	N	Q	W	V	K	E	A	K	A	K	I	A	K	E	H	P	G	W	E
Query Conservation
Alig confidence		.	.														.	.	.	.	.	.																					.	.	.													.	.
Template Conservation		.	.														.	.	.	.	.	.																					.	.	.													.	.
Template Sequence		.	.	D	I	P	D	F	T	V	P	D	S	L	P	D	.	.	.	.	.	.	S	V	A	N	D	D	F	R	G	A	E	I	A	T	K	H	L	I	D	L	.	.	.	G	H	T	H	I	A	H	L	R	V	G	S	.	.	G	A	G	L	R	R	F	E	S	F	E	A	T	X	R	A	H	G	L	E	P	L
Template Known Secondary structure		.	.	S	S	S	S	S				B					.	.	.	.	.	.																				T	.	.	.	T			S							S	S	.	.																	T	T
Template Predicted Secondary structure		.	.														.	.	.	.	.	.																					.	.	.													.	.
Template SS confidence
				127	.	.	130	.	.	.	.	.	.	.	.	.							140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.				160	.	.	.	.	.	.	.	.	.	170	.			.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.				.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure																																																					.	.	.
Query SS confidence																																																					.	.	.
Query Sequence		I	V	T	T	Q	F	G	Y	N	D	A	T	K	S	L	Q	T	A	E	G	I	L	K	A	Y	S	D	L	D	A	I	I	A	P	D	A	N	A	L	P	A	A	A	Q	A	A	E	N	L	K	N	.	.	.	D	K	V	A	I	V	G	F	S	T	P	N	V	M	R	P	Y	V	E	R	G	T	V	K	E	F
Query Conservation																																																					.	.	.
Alig confidence							.																																														.	.	.													.										.	.
Template Conservation							.																																																													.										.	.
Template Sequence		S	N	D	Y	L	.	G	P	A	V	E	H	A	G	Y	T	E	T	L	A	L	L	K	E	H	P	E	V	T	A	I	F	S	S	N	D	I	T	A	I	G	A	L	G	A	A	R	E	L	G	L	R	V	P	E	D	L	S	I	I	G	Y	D	N	T	P	.	L	A	Q	T	R	L	I	N	L	.	.	T	T
Template Known Secondary structure							.	S																			T	T							S	S															T			T	T	T	T							S				.				S	T	T	T			.	.
Template Predicted Secondary structure							.																																																													.										.	.
Template SS confidence
		209	210	.	.	.		.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.		.	.	.	.	.	.	280	.	.			.	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	W	D	V	V	Q	Q	G	K	I	S	V	Y	V	A	D	A	L	L	K	K	G	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	D	D	N	S	I	G	V	G	Y	N	A	A	L	L	L	L	S	X	L	E	I	X	H
Template Known Secondary structure																									S
Template Predicted Secondary structure
Template SS confidence
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions