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Job DescriptionP76142
Confidence99.97%DateThu Jan 5 12:19:35 GMT 2012
Rank40Aligned Residues261
% Identity11%Templatec3gv0A_
PDB info PDB header:transcription regulatorChain: A: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of laci family transcription regulator from2 agrobacterium tumefaciens
Resolution2.35 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   26...30......... 40.........50.........60.........70.........80.........90.........100...
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Query Sequence  AAERIAFIPKLVGV. . GFFTSGGNGAQQAGKELGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSAVSPDGLCPALK
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Template Sequence  KTNVIALVLSVDEELXGFTSQXVFGITEVLSTTQYHLVVT. PHIHAKDSXVPIRYILETGSADGVIISKIEPN. . DPRVR
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   65....70.........80.........90.........100.... .....110.........120.........130...... ...140.
 
   104.....110.........120.........130.........140.........150.........160.........170.........180...
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Query Sequence  RAMQRGVRVLTWDSDTKPECRSYYINQGTPAQLGGMLVDMAARQVNKDKAKVAFFYSSPTVTDQNQWVKEAKAKIAKEHP
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Template Sequence  FXTERNXPFVTHGRSDXGIEHAF. . HDFDNEAYAYEAVERLAQC. . . GRKRIAVIVPPSRFSFHDHARKGFNRGIRDFGL
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   142.......150.........160.... .....170.........180... ......190.........200.........210......
 
   184.....190.........200.........210.........220.........230....... ..240.........250.........260
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Query Sequence  GWEIVTTQFGYNDATKSLQTAEGILKAYSDLDAIIAPDANALPAAAQAAENLKN. . . DKVAIVGFSTPNVMRPYVERGTV
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Template Sequence  TEFPIDAVTIETPLEKIRDFGQRLXQSSDRPDGIVSISGSSTIALVAGFEAAGVKIGEDVDIVSKQSAEFL. NWIKPQI.
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   217..220.........230.........240.........250.........260.........270.........280....... ..290....
 
   261........270.........280.........290.......
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Query Sequence  KEFGLWDVVQQGKISVYVADALLKKGSMKTGDKLDIK
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Template Sequence  . HTVNEDIKLAGRELAKALLARINGEAAETLQSISGP
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   295....300.........310.........320.........330
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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