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Job DescriptionP76142
Confidence100.00%DateThu Jan 5 12:19:35 GMT 2012
Rank16Aligned Residues280
% Identity12%Templatec3gbvB_
PDB info PDB header:transcription regulatorChain: B: PDB Molecule:putative laci-family transcriptional regulator; PDBTitle: crystal structure of a putative laci transcriptional regulator from2 bacteroides fragilis
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   26...30..... ....40.........50....... ..60.........70.........80.........90.........100.
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Query Sequence  AAERIAFIPK. LVGVGFFTSGGNGAQQAGKELG. . . VDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSAVSPDGLCPA
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Template Sequence  KKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVXFAPTVPQYTKGF
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TTSTGGG

TT


S


S
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   64.....70.........80.........90.........100.........110.........120.........130.........140...
 
   102.......110.........120.........130.........140.........150.... .....160.........170........
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Query Sequence  LKRAMQRGVRVLTWDSDTKPECRSYYINQGTPAQLGGMLVDMAARQVNKDKAK. . . VAFFYSSPTVTDQNQWVKEAKAKI
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Template Sequence  TDALNELGIPYIYIDSQIKDAPPLAFFG. QNSHQSGYFAARXLXLLAVNDREIVIFRKIHEGVIGSNQQESREIGFRQYX
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   144.....150.........160.........170. ........180.........190.........200.........210.........220..
 
   179180.........190.........200.........210.........220.........230.........240.........250........
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Query Sequence  AKEHPGWEIVTTQFGYNDATKSLQTAEGILKAYSDLDAIIAPDANALPAAAQAAENLKNDKVAIVGFSTPNVMRPYVERG
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Template Sequence  QEHHPAC. . NILELNLHADLEDSRXLDDFFREHPDVKHGITFNSKVYIIGEYLQQRRK. SDFSLIGYDLLERNVTCLKEG
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TTS..TT


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   223...... 230.........240.........250.........260.........270........ .280.........290.........
 
   259260.........270.........280.........290.........300.........310.........320.........330........
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Query Sequence  TVKEFGLWDVVQQGKISVYVADALLKKGSMKTGDKLDIKGVGQVEVSPNSVQGYDYEADGNGIVLLPERVIFNKENIGKY
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Template Sequence  TVSFLIAQQPELQGFNSIKTLCDHLIFRKEVACT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . NYXPIDLLTKENIDYY
Template Known Secondary structure  S

TS




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   302.......310.........320.........330..... ....340.........350.
 
   339
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Query Sequence  D
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Template Sequence  H
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   352
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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