Job Description P76142 Confidence 65.55% Date Thu Jan 5 12:19:35 GMT 2012 Rank 185 Aligned Residues 69 % Identity 16% Template c2zkqb_ PDB info PDB header:ribosomal protein/rna Chain: B: PDB Molecule:rna expansion segment es3; PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Resolution 8.70 Å

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		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.			.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																																																						.	.
Query SS confidence																																																						.	.
Query Sequence		Q	G	Y	N	A	I	I	V	S	A	V	S	P	D	G	L	C	P	A	L	K	R	A	M	Q	R	G	V	R	V	L	T	W	D	S	D	T	K	P	E	C	R	S	Y	Y	I	N	Q	G	T	P	A	.	.	Q	L	G	G	M	L	V	D	M	A	A	R	Q	V	N	K	D	K	A
Query Conservation																																																						.	.
Alig confidence											.	.																																										.	.
Template Conservation											.	.
Template Sequence		R	E	P	R	L	L	V	V	T	.	.	D	P	R	A	D	H	Q	P	L	T	E	A	S	Y	V	N	L	P	T	I	A	L	C	N	T	D	S	P	L	R	Y	V	D	I	A	I	P	C	N	N	K	G	A	H	S	V	G	L	M	W	W	M	L	A	R	E	V	L	R	M	R	G
Template Known Secondary structure					S					S	.	.		T	T	T	T											T									T	T				T	T		S					S		S	S																					S
Template Predicted Secondary structure											.	.
Template SS confidence
		116	.	.	.	120	.	.	.	.			.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions