Job Description P76142 Confidence 97.80% Date Thu Jan 5 12:19:35 GMT 2012 Rank 98 Aligned Residues 196 % Identity 9% Template c2wjxA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:glutamate receptor 2; PDBTitle: crystal structure of the human ionotropic glutamate2 receptor glur2 atd region at 4.1 a resolution Resolution 4.10 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.						.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure																																	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.
Query Sequence		A	E	R	I	A	F	I	P	K	L	V	G	V	G	F	F	T	S	G	G	N	G	A	Q	Q	A	G	K	E	L	G	.	.	.	.	.	V	D	V	T	Y	D	G	P	T	E	P	S	V	S	G	Q	V	Q	L	I	N	N	F	V	N	Q	G	Y	N	A	I	I	V	S	A	V	S	P	D	G	L	C	P	A
Query Conservation																																	.	.	.	.	.
Alig confidence														.	.	.	.																.	.	.	.	.																																		.
Template Conservation														.	.	.	.																																																						.
Template Sequence		S	I	Q	I	G	G	L	F	P	R	G	A	.	.	.	.	D	Q	E	Y	S	A	F	R	V	G	M	V	Q	F	S	T	S	E	F	R	L	T	P	H	I	D	N	L	E	V	A	N	S	F	A	V	T	N	A	F	C	S	Q	F	S	R	G	V	Y	A	I	F	G	.	F	Y	D	K	K	S	V	N	T	I
Template Known Secondary structure											T	T		.	.	.	.																	S	S												T	T																T		S					.				T	T	T
Template Predicted Secondary structure														.	.	.	.																																																						.
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.					.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90		.	.	.	.	.	.	.	.	.	100
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	R	A	M	Q	R	G	V	R	V	L	T	W	D	S	D	T	K	P	E	C	R	S	Y	Y	I	N	Q	G	T	P	A	Q	L	G	G	M	L	V	D	M	A	A	R	Q	V	N	K	D	K	A	K	V	A	F	F	Y	S	S	P	T	V	T	D	Q	N	Q	W	V	K	E	A	K	A	K	I	A	K	E
Query Conservation
Alig confidence																																													.	.	.	.	.	.																.	.	.
Template Conservation																																													.	.	.	.	.	.																.	.	.
Template Sequence		T	S	F	C	G	T	L	H	V	S	F	I	T	P	S	F	P	T	D	G	T	H	P	F	V	I	Q	M	R	P	D	L	K	G	A	L	L	S	L	I	E	Y	Y	.	.	.	.	.	.	Q	W	D	K	F	A	Y	L	Y	D	S	D	R	G	L	.	.	.	S	T	L	Q	A	V	L	D	S	A	A	E	K
Template Known Secondary structure									T							S				S	S			T	T					S														T	.	.	.	.	.	.	T										T	T	S		S	.	.	.
Template Predicted Secondary structure																																													.	.	.	.	.	.																.	.	.
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.							.	.	.	.	.	.	150	.	.	.	.	.	.	.	.				.	160	.	.	.	.	.	.	.	.	.	170	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.			.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.
Query SS confidence																	.	.
Query Sequence		H	P	G	W	E	I	V	T	T	Q	F	G	Y	N	D	.	.	A	T	K	S	L	Q	T	A	E	G	I	L	K	A	Y	S	D	L	D	A	I	I	A	P	D	A	N	A	L	P	A	A	A	Q	A	A	E	N	L	K	N
Query Conservation																	.	.
Alig confidence																	.	.																			.
Template Conservation																																					.
Template Sequence		K	W	Q	V	T	A	I	N	V	G	N	I	N	N	D	K	K	D	E	M	Y	R	S	L	F	Q	D	L	E	L	K	K	E	R	R	.	V	I	L	D	C	E	R	D	K	V	N	D	I	V	D	Q	V	I	V	K	G	Y
Template Known Secondary structure		T													S	S	T															T	T				.					S															T	T
Template Predicted Secondary structure																																					.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.		.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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