Job Description P76142 Confidence 100.00% Date Thu Jan 5 12:19:35 GMT 2012 Rank 8 Aligned Residues 290 % Identity 27% Template c2qvcC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:sugar abc transporter, periplasmic sugar-binding PDBTitle: crystal structure of a periplasmic sugar abc transporter2 from thermotoga maritima Resolution 2.40 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	I	A	F	I	P	K	L	V	G	V	G	F	F	T	S	G	G	N	G	A	Q	Q	A	G	K	E	L	G	V	D	V	T	Y	D	G	P	T	E	P	S	V	S	G	Q	V	Q	L	I	N	N	F	V	N	Q	G	Y	N	A	I	I	V	S	A	V	S	P	D	G	L	C	P	A	L	K	R	A	M	Q
Query Conservation
Alig confidence									.
Template Conservation									.
Template Sequence		L	T	I	G	V	I	G	.	K	S	V	H	P	Y	W	S	Q	V	E	Q	G	V	K	A	A	G	K	A	L	G	V	D	T	K	F	F	V	P	Q	K	E	D	I	N	A	Q	L	Q	X	L	E	S	F	I	A	E	G	V	N	G	I	A	I	A	P	S	D	P	T	A	V	I	P	T	I	K	K	A	L	E
Template Known Secondary structure									.	S		S	S																		T									S	S																T	T		S							S	S	T	T	T	T
Template Predicted Secondary structure									.
Template SS confidence
		32	.	.	.	.	.	.		.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	V	R	V	L	T	W	D	S	D	T	K	P	E	C	R	S	Y	Y	I	N	Q	G	T	P	A	Q	L	G	G	M	L	V	D	M	A	A	R	Q	V	N	K	D	K	A	K	V	A	F	F	Y	S	S	P	T	V	T	D	Q	N	Q	W	V	K	E	A	K	A	K	I	A	K	E	H	P	G	W	E	I
Query Conservation
Alig confidence																								.																				.																																.	.
Template Conservation																								.																				.																																.	.
Template Sequence		X	G	I	P	V	V	T	L	D	T	D	S	P	D	S	G	R	Y	V	Y	I	G	.	T	D	N	Y	Q	A	G	Y	T	A	G	L	I	X	K	E	L	L	G	.	G	K	G	K	V	V	I	G	T	G	S	L	T	A	X	N	S	L	Q	R	I	Q	G	F	K	D	A	I	K	D	S	.	.	E	I	E	I
Template Known Secondary structure		T	T							S	S			T	T	S			S					.																		T	T	.	T									S		S	S	S													T	T	T	T	S	.	.
Template Predicted Secondary structure																								.																				.																																.	.
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.		.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.			.	.	.	.
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.		.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure																																																			.
Query SS confidence																																																			.
Query Sequence		V	T	T	Q	F	G	Y	N	D	A	T	K	S	L	Q	T	A	E	G	I	L	K	A	Y	S	D	L	D	A	I	I	A	P	D	A	N	A	L	P	A	A	A	Q	A	A	E	N	L	K	.	N	D	K	V	A	I	V	G	F	S	T	P	N	V	M	R	P	Y	V	E	R	G	T	V	K	E	F	G	L	W
Query Conservation																																																			.
Alig confidence																																																			.
Template Conservation
Template Sequence		V	D	I	L	N	D	E	E	D	G	A	R	A	V	S	L	A	E	A	A	L	N	A	H	P	D	L	D	A	F	F	G	V	Y	A	Y	N	G	P	A	Q	A	L	V	V	K	N	A	G	K	V	G	K	V	K	I	V	C	F	D	T	T	P	D	I	L	Q	Y	V	K	E	G	V	I	Q	A	T	X	G	Q
Template Known Secondary structure								T	T																	T	T							S	S	T	T												T	T		T	T	T	S																	T	T	S
Template Predicted Secondary structure
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	V	Q	Q	G	K	I	S	V	Y	V	A	D	A	L	L	K	K	G	S	M	K	T	G	D	K	L	D	I	K	G	V	G	Q	V	E	V	S	P	N	S	V	Q	G	Y	D	Y	E	A	D	G	N	G	I	V	L	L	P	E	R	V	I	F	N	K	E	N	I	G	K	Y
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	P	Y	X	X	G	Y	L	S	V	T	V	L	Y	L	X	N	K	I	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	Q	N	T	L	X	X	L	P	K	V	K	V	D	G	K	V	D	Y	V	I	D	T	G	V	D	V	V	T	P	E	N	L	D	E	Y
Template Known Secondary structure																				T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	S						T	T															T	T	T
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.																	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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