Job Description P76142 Confidence 20.77% Date Thu Jan 5 12:19:35 GMT 2012 Rank 403 Aligned Residues 234 % Identity 12% Template c2eyqA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:transcription-repair coupling factor; PDBTitle: crystal structure of escherichia coli transcription-repair2 coupling factor Resolution 3.20 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	K	I	A	L	L	S	A	L	G	I	A	A	I	S	M	N	V	Q	A	A	E	R	I	A	F	I	P	K	L	V	G	V	G	F	F	T	S	G	G	N	G	A	Q	Q	A	G	K	E	L	G	V	D	V	T	Y	D	G	P	T	E	P	S	V	S	G	Q	V	Q	L	I	N	N	F	V	N	Q	G	Y	N
Query Conservation
Alig confidence																.	.	.	.	.													.	.																									.
Template Conservation																.	.	.	.	.													.	.																									.
Template Sequence		K	T	E	V	A	M	R	A	A	F	L	A	V	D	.	.	.	.	.	N	H	K	Q	V	A	V	L	V	P	T	T	.	.	L	L	A	Q	Q	H	Y	D	N	F	R	D	R	F	A	N	W	P	V	R	I	E	M	I	.	S	R	F	R	S	A	K	E	Q	T	Q	I	L	A	E	V	A	E	G	K	I	D
Template Known Secondary structure		T													T	.	.	.	.	.	T	T								S	S		.	.														S	T	T	T	T							.	S	T	T	S														T	T			S
Template Predicted Secondary structure																.	.	.	.	.													.	.																									.
Template SS confidence
		634	.	.	.	.	.	640	.	.	.	.	.	.	.						.	.	650	.	.	.	.	.	.	.	.	.			660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.		.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	I	V	S	A	V	S	P	D	G	L	C	P	A	L	K	R	A	M	Q	R	G	V	R	V	L	T	W	D	S	D	T	K	P	E	C	R	S	Y	Y	I	N	Q	G	T	P	A	Q	L	G	G	M	L	V	D	M	A	A	R	Q	V	N	K	D	K	A	K	V	A	F	F	Y	S	S	P	T	V	T	D
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.																												.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.																												.
Template Sequence		I	L	I	G	T	H	.	.	.	.	.	.	.	.	.	.	.	K	L	L	Q	S	D	V	K	.	.	.	.	.	.	.	.	.	.	.	F	K	D	L	G	L	L	I	V	D	E	E	H	R	F	G	V	R	H	K	E	R	I	K	A	M	R	.	A	N	V	D	I	L	T	L	T	A	T	P	I	P	R	T
Template Known Secondary structure							T	.	.	.	.	.	.	.	.	.	.	.					S				.	.	.	.	.	.	.	.	.	.	.		S	S								S	G	G	G	S													.	T	T	S							S	S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.																												.
Template SS confidence
		706	.	.	.	710	.												.	.	.	.	.	.	.	.												720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.		.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.
		167	.	.	170	.	.	.	.	.	.			.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.		.	240	.	.	.
Predicted Secondary structure												.	.																																																															.
Query SS confidence												.	.																																																															.
Query Sequence		Q	N	Q	W	V	K	E	A	K	A	.	.	K	I	A	K	E	H	P	G	W	E	I	V	T	T	Q	F	G	Y	N	D	A	T	K	S	L	Q	T	A	E	G	I	L	K	A	Y	S	D	L	D	A	I	I	A	P	D	A	N	A	L	P	A	A	A	Q	A	A	E	N	L	K	N	D	.	K	V	A	I	V
Query Conservation												.	.																																																															.
Alig confidence												.	.																																							.																								.
Template Conservation																																																				.
Template Sequence		L	N	M	A	M	S	G	M	R	D	L	S	I	I	A	T	P	P	A	R	R	L	A	V	K	T	F	V	R	E	Y	D	S	M	V	V	R	E	A	I	L	R	E	I	L	R	G	G	Q	V	.	Y	Y	L	Y	N	D	V	E	N	I	Q	K	A	A	E	R	L	A	E	L	V	P	E	A	R	I	A	I	G
Template Known Secondary structure							T	T	T	S											B		B																							T	T	T				.							S	S														T	T	S
Template Predicted Secondary structure																																																				.
Template SS confidence
		763	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.		.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.
		244	.	.	.	.	.	250	.	.	.	.	.					.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure														.	.	.	.
Query SS confidence														.	.	.	.
Query Sequence		G	F	S	T	P	N	V	M	R	P	Y	V	.	.	.	.	E	R	G	T	V	K	E	F	G	L	W	D	V	V	Q	Q	G
Query Conservation														.	.	.	.
Alig confidence														.	.	.	.
Template Conservation
Template Sequence		H	G	Q	M	R	E	R	E	L	E	R	V	M	N	D	F	H	H	Q	R	F	N	V	L	V	C	T	T	I	I	E	T	G
Template Known Secondary structure			S	S															T	T	S							S	S	T	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		842	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions