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Job DescriptionP76142
Confidence99.96%DateThu Jan 5 12:19:35 GMT 2012
Rank56Aligned Residues291
% Identity13%Templatec1zvvA_
PDB info PDB header:transcription/dnaChain: A: PDB Molecule:glucose-resistance amylase regulator; PDBTitle: crystal structure of a ccpa-crh-dna complex
Resolution2.98 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10...... ...20.........30.........40.........50.........60.........70.........
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Query Sequence  HRFKKIALLSALG. . . . IAAISMNVQAAERIAFIPKLVGVGFFTSGGNGAQQAGKELGVDVTYDGPTEPSVSGQVQLINN
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Template Sequence  TRKKVLETIERLGYRPNAVARGLASKKTTTVGVIIPDISNIFYAELARGIEDIASMYKYNIILS. NSDQNQDKQLHLLNN
Template Known Secondary structure  T



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   33......40.........50.........60.........70.........80.........90...... ...100.........110.
 
   80.........90.........100.........110.........120.........130.........140.........150.........
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Query Sequence  FVNQGYNAIIVSAVSPDGLCPALKRAMQRGVRVLTWDSDTKPECRSYYINQGTPAQLGGMLVDMAARQVNKDKAKVAFFY
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Template Sequence  MLGKQVDGIIFMSGNVT. . EEHVEELKKSPVPVVLAASIESTNQIPS. . VTIDYEQAAFDAVQSLIDS. . . GHKNIAFVS
Template Known Secondary structure  T
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   112.......120........ .130.........140.........150...... ...160.........170..... ....180....
 
   160...... ...170.........180.........190.........200.........210.........220.........230......
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Query Sequence  SSPTVTD. QNQWVKEAKAKIAKEHPGWEIVTTQFGYNDATKSLQTAEGILKAYSDLDAIIAPDANALPAAAQAAENLK. .
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Template Sequence  GTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIFVGTDEMALGVIHGAQDRGLN
Template Known Secondary structure  S
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   185....190.........200.........210.........220.........230.........240.........250.........260....
 
   237..240.........250.........260.........270.........280.........290.........300.........310.....
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Query Sequence  . NDKVAIVGFSTPNVMRPYVERGTVKEFGLWDVVQQGKISVYVADALLKKGSMKTGDKLDIKGVGQVEVSPNSVQGYDYE
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Template Sequence  VPNDLEIIGFDNTRL. STMVRPQL. . TSVVQPMYDIGAVAMRLLTKYMNKETVDSSI. . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TTTT


TT.TTTSSS

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   265....270......... 280....... ..290.........300.........310........
 
   316...320.........330.....
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Query Sequence  ADGNGIVLLPERVIFNKENI
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Template Sequence  . . . . . . . VELPHRIEFRQST
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   319320.........330.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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