Job Description P33634 Confidence 53.51% Date Thu Jan 5 11:52:26 GMT 2012 Rank 301 Aligned Residues 203 % Identity 11% Template d1pc3a_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 2.16

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		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.							.	.
Predicted Secondary structure																																																																										.	.	.	.	.	.
Query SS confidence																																																																										.	.	.	.	.	.
Query Sequence		A	K	K	E	S	D	P	D	G	E	L	R	V	V	S	G	E	T	L	L	S	Y	R	M	P	Q	V	L	Q	R	F	R	Q	R	A	P	K	V	R	L	S	L	Q	S	L	N	C	Y	V	I	R	D	A	L	L	N	D	E	A	D	V	G	V	F	Y	R	V	G	N	D	D	A	.	.	.	.	.	.	L	N
Query Conservation																																																																										.	.	.	.	.	.
Alig confidence																																																																										.	.	.	.	.	.
Template Conservation
Template Sequence		V	A	T	T	P	A	S	S	P	V	T	L	A	E	T	G	S	T	L	L	Y	P	L	F	N	L	W	G	P	A	F	H	E	R	Y	P	N	V	T	I	T	A	Q	G	T	G	S	G	A	G	I	A	Q	A	A	A	G	T	V	N	I	G	A	S	D	A	Y	L	S	E	G	D	M	A	A	H	K	G	L	M
Template Known Secondary structure					S			S	S										T	T	T															S	T	T							B												T	T	S		S					S	S										S	T	T
Template Predicted Secondary structure
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	R	E	L	G	E	Q	S	L	V	L	V	A	S	P	Q	I	A	D	V	D	F	T	E	P	G	R	H	N	A	C	S	F	I	I	N	E	P	Q	C	V	F	R	Q	I	F	E	S	T	L	R	Q	R	R	I	T	V	E	N	T	I	E	L	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.
Template Sequence		N	I	A	L	A	I	S	A	Q	Q	V	N	Y	N	L	P	G	V	S	E	H	.	L	K	L	N	G	K	V	L	A	A	M	Y	Q	G	T	I	K	T	W	D	D	P	Q	I	A	A	L	N	P	G	V	N	L	P	G	T	A	V	V	P	L	H	R	S	D	G	S	G	D	T	F	L	F	T	Q	Y	L	S
Template Known Secondary structure																	T	T			S		.														T	S			B	T	T								S	T	T							B							S	S
Template Predicted Secondary structure																							.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
																																220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	I	E	S	I	K	R	C	V	A	A	N	I	G	V	S	Y	L	P	R	F	A	V	A	K	E	L	E	C	G	E	L	I	E	L	P	F	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																										.
Template Sequence		K	Q	D	P	E	G	W	G	K	S	P	G	F	G	T	T	V	D	F	P	A	V	P	G	A	L	G	E	N	G	N	G	G	M	V	T	G	C	A	E	T	P	G	C	V	A	Y	I	G	I	S	F	L	D	Q	A	.	S	Q	R	G	L	G	E	A	Q	L	G	N	S	S	G	N	F	L	L	P	D	A	Q
Template Known Secondary structure					T	T	T	T	T	T	T	T			S	S	S							T	T																	S	T	T							G	G	G					.			T	T									T	T	S						S
Template Predicted Secondary structure																																																										.
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.		.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
																													257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.				.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	Q	S	Q	T	I	T	A	M	C	A	H	H	A	G	K	A	V	.	.	.	S	P	A	M	H	T	F	I	Q	C	V
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.
Template Conservation
Template Sequence		S	I	Q	A	A	A	A	G	F	A	S	K	T	P	A	N	Q	A	I	S	M	I	D	G	P	A	P	D	G	Y	P	I	I	N	Y	E	Y	A	I	V	N	N	R	Q	K	D	A	A	T	A	Q	T	L	Q	A	F	L	H	W	A
Template Known Secondary structure								T	T	T	T	T				T	T						T	T		S		T	T			S											S	B		S	S
Template Predicted Secondary structure
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions