Job Description P33634 Confidence 99.62% Date Thu Jan 5 11:52:26 GMT 2012 Rank 34 Aligned Residues 199 % Identity 17% Template c3hhfB_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, lysr family; PDBTitle: structure of crga regulatory domain, a lysr-type transcriptional2 regulator from neisseria meningitidis. Resolution 2.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	E	L	R	V	V	S	G	E	T	L	L	S	Y	R	M	P	Q	V	L	Q	R	F	R	Q	R	A	P	K	V	R	L	S	L	Q	S	L	N	C	Y	V	I	R	D	A	L	L	N	D	E	A	D	V	G	V	F	Y	R	V	G	N	D	D	A	L	N	R	R	E	L	G	E	Q	S	L	V	L	V	A
Query Conservation
Alig confidence																																												.	.	.
Template Conservation																																												.	.	.
Template Sequence		Q	G	V	L	S	V	D	S	A	X	P	X	V	L	H	L	L	A	P	L	A	A	K	F	N	E	R	Y	P	H	I	R	L	S	L	V	S	S	E	G	Y	I	.	.	.	N	L	I	E	R	K	V	D	I	A	L	R	A	G	D	D	S	G	L	R	A	R	H	L	F	D	S	R	F	R	V	I	A	S	P
Template Known Secondary structure																	T													T	T									S	T	T		.	.	.				T	T	S	S	S									S	S
Template Predicted Secondary structure																																												.	.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.				.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	P	Q	I	A	D	V	D	F	T	E	P	G	R	H	N	A	C	S	F	I	I	N	E	P	Q	C	V	F	R	Q	I	F	E	S	T	L	R	Q	R	R	I	T	V	E	N	T	I	E	L	I	S	I	E	S	I	K	R	C	V	A	A	N	I	G	V	S	Y	L	P	R	F	A	V	A	K	E	L	E	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	Y	L	A	K	H	G	T	P	Q	S	T	E	E	L	A	G	H	Q	C	L	G	F	T	E	P	G	S	L	N	T	W	A	V	L	D	A	Q	G	N	P	Y	K	I	S	P	H	F	T	A	S	S	G	E	I	L	R	S	L	C	L	S	G	C	G	I	V	C	L	S	D	F	L	V	D	N	D	I	A	E
Template Known Secondary structure											S	S	G	G	G	G	G	G	S		B				S	S		G	G	G	G							T	T	S								S	S			S	S										T	T	S		B
Template Predicted Secondary structure
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		249	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		G	E	L	I	E	L	.	P	F	G	E	Q	S	Q	T	I	T	A	M	C	A	H	H	A	G	K	A	V	S	P	A	M	H	T	F	I	Q	C	V	E	E	S	F
Query Conservation								.
Alig confidence								.
Template Conservation
Template Sequence		G	K	L	I	P	L	L	A	E	Q	T	S	D	K	T	H	P	F	N	A	V	Y	Y	S	D	K	A	V	N	L	R	L	R	V	F	L	D	F	L	V	E	E	L
Template Known Secondary structure		T	S	S					T	T	T	B													G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions