 |
Job Description | P09323 | Confidence | 37.43% | Date | Thu Jan 5 11:02:10 GMT 2012 |
Rank | 97 | Aligned Residues | 45 |
% Identity | 16% | Template | d1y14b1 |
SCOP info | OB-fold
| Nucleic acid-binding proteins
| Cold shock DNA-binding domain-like
|
Resolution | 2.30 |
|
 |
  |   |
542 | . | . | . | . | . | . | . | 550 | . | . | . | . | . | . | . | . | . | 560 | . | . | . | . | . | . | . | . | . | 570 | . | . | . | . | . | . | . | . | . | 580 | . | . | |
|
|
|
|
|
|
|
. | . | . | . | . | . | . | 590 | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |  |  |  |  |
|
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | A | G | T | I | V | K | I | F | N | T | N | H | A | F | C | L | E | T | E | K | G | A | E | I | V | V | H | M | G | I | D | T | V | A | L | E | G | K | G | F | . |
. |
. |
. |
. |
. |
. |
. |
K | R | L | V | E | E | G | A | Q | V | S |
Query Conservation |   |
  |   |
|   |
|   |   |   |   |   |
|   |
|
|   |   |   |   |   |   |   |
|   |
|
|
|
|
|
|
|
|
|
|
|   |
|   |
|   |   |
| . | . | . | . | . | . | . | . |   |   |   |
|   |   |
|   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|   |
|   |   |
|   |   | . | . |   |
|   |
|
|   |
| . |
|   |
|   |
|   |
|   |   | . | . | . | . |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|
|
Template Sequence |   |
V | D | G | T | V | V | S | C | S | Q | . |
. |
H | G | F | E | V | Q | V | . |
G | P | M | K | V | F | V | T | K | . |
. |
. |
. |
H | L | M | P | Q | D | L | T | F | N | A | S | Y | Q | S | S | E | D | V | I | T | I | K | S | R | I | R |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  | T | . | . | T |  |  |  |  |  |  | . | T | T |  |  |  |  |  |  | G | . | . | . | . | G | G | S |
| T | T |
|  |  |
|
|
|  |  |
| S | S |
|  |  |
| T | T |
|  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
| . | . |
|  |  |  |  |  |  | . |
|
|
|  |  |  |  |  |  | . | . | . | . |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
87 | . | . | 90 | . | . | . | . | . | . | |
|
. | . | . | 100 | . | . | . | |
. | . | . | . | . | . | 110 | . | . | |
|
|
|
. | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|