Job Description P09323 Confidence 100.00% Date Thu Jan 5 11:02:10 GMT 2012 Rank 5 Aligned Residues 368 % Identity 14% Template c3qnqD_ PDB info PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system Resolution 3.29 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.														.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	F	Q	R	L	G	R	A	L	Q	L	P	I	A	V	L	P	V	A	A	L	L	L	R	F	G	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	P	D	L	L	N	V	A	F	I	A	Q	A	G	G	A	I	F	D	N	L	A	L	I	F	A	I	G	V	A	S	S	W	S	K	D	S	A	G	A	A
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	L	L	A	I	R	D	G	L	V	L	T	M	P	F	L	I	I	G	S	I	F	L	I	I	S	T	L	P	I	P	G	Y	S	E	F	M	A	S	L	F	G	K	N	W	N	V	A	L	G	Y	P	V	S	A	T	F	N	I	M	A	L	I	A	V	F	G	I	A	Y	R	L	G	E	Y	Y	K	V	D	A
Template Known Secondary structure											G	G	G	T	T													T				T	T	T	T	T						T		S			T	T	G	G	G								T	T																		T	S
Template Predicted Secondary structure
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.																									.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	L	A	G	A	V	G	Y	F	V	L	T	K	A	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	T	I	N	P	E	I	N	M	G	V	L	A	G	I	I	T	G	L	V	G	G	A	A	Y	N	R	W	S	D	I	K	L	P	D	F	L	S	F	F	G
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	A	S	G	A	L	S	L	V	T	F	L	L	A	T	P	F	Q	V	A	Y	I	M	P	G	T	K	E	S	I	L	V	D	G	V	I	P	A	A	L	M	G	S	Q	G	L	F	V	A	M	I	I	A	I	I	S	T	E	I	Y	R	F	L	V	Q	K	K	M	I	I	K	M	P	E	T	V	P	P	A	V
Template Known Secondary structure																S		S							T	T	T	S							S				T	T	T	T	T	T	T	T																					T	T		S					T	T	S
Template Predicted Secondary structure
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.						.	.	.	.	.	160	.	.	.	.	.	.	.	.				.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure																												.	.	.	.	.															.	.	.
Query SS confidence																												.	.	.	.	.															.	.	.
Query Sequence		G	K	R	F	V	P	I	A	T	G	F	F	C	L	V	L	A	A	I	F	G	Y	V	W	P	P	.	.	.	.	.	V	Q	H	A	I	H	A	G	G	E	W	I	V	S	.	.	.	A	G	A	L	G	S	G	I	F	G	F	I	N	R	L	L	I	P	T	G	L	H	Q	V	L	N	T	I	A	W	F	Q
Query Conservation																												.	.	.	.	.															.	.	.
Alig confidence																												.	.	.	.	.															.	.	.
Template Conservation
Template Sequence		T	R	S	F	A	A	L	I	P	G	F	I	V	V	T	V	V	W	I	I	R	L	I	F	E	H	T	T	F	G	S	I	H	N	V	V	G	K	L	L	Q	E	P	L	S	I	L	G	A	S	L	W	G	A	V	I	A	V	I	L	V	H	V	L	W	A	C	G	I	H	G	A	T	I	V	G	G	V	M	S
Template Known Secondary structure																											T	S	S	S		S									T	T	T								S																	T	T	S						T
Template Predicted Secondary structure
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	E	F	T	N	A	A	G	T	V	F	H	G	D	I	N	R	F	Y	A	G	D	G	T	A	G	M	F	M	S	G	F	F	P	I	M	M	F	G	L	P	G	A	A	L	A	M	Y	F	A	A	P	K	E	R	R	P	M	V	G	G	M	L	L	S	V	A	V	T	A	F	L	T	G	V	T	E	P	L
Query Conservation
Alig confidence																																																																.	.	.	.
Template Conservation																																																																.	.	.	.
Template Sequence		P	I	W	L	S	L	M	D	Q	N	R	I	A	F	Q	A	G	Q	D	V	P	N	T	I	T	A	Q	F	F	D	L	W	I	Y	M	G	G	S	G	A	T	L	A	L	V	V	G	M	L	L	F	A	R	S	Q	Q	L	K	S	L	G	R	.	.	.	.	L	S	I	A	P	G	I	F	N	I	N	E	M	V
Template Known Secondary structure																	T	T						S										T	S		S	S	S	S	S	T													S									.	.	.	.		T	S					T	T
Template Predicted Secondary structure																																																																.	.	.	.
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.					.	.	.	.	.	.	.	330	.	.	.	.	.	.
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.					.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.
Query SS confidence																																				.	.	.	.
Query Sequence		E	F	L	F	M	F	L	A	P	L	L	Y	L	L	H	A	L	L	T	G	I	S	L	F	V	A	T	L	L	G	I	H	A	G	.	.	.	.	F	S	F	S	A	G	A	I	D	Y	A	L	M	Y	N	L	P	A	A	S	Q	N	V	W	M	L	L	V	M	G	V	I	F	F	A	I	Y	F	V	V	F	S
Query Conservation																																				.	.	.	.
Alig confidence																																				.	.	.	.
Template Conservation
Template Sequence		T	F	G	M	P	I	V	M	N	P	L	L	L	I	P	F	I	V	V	P	V	V	L	T	I	V	S	Y	F	A	M	E	W	G	L	V	A	R	P	S	G	A	A	V	T	W	T	T	P	I	L	F	S	G	Y	L	G	S	G	G	K	I	S	G	V	I	L	Q	L	V	N	F	A	L	A	F	V	I	Y	L
Template Known Secondary structure					T	T		T	T		T	T	T																					T	T	S	S					S					T	T	S									T	T	T	T		T	T	T
Template Predicted Secondary structure
Template SS confidence
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	I	R	M	F	N	L	K	T	P	G	R	E	D	K	E	D	E	I	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	F	L	K	I	W	D	K	Q	K	I	A	E	E	K	G	E	A	A	A	E
Template Known Secondary structure																T	T
Template Predicted Secondary structure
Template SS confidence
		417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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