Job Description P00547 Confidence 100.00% Date Thu Jan 5 10:56:41 GMT 2012 Rank 22 Aligned Residues 274 % Identity 16% Template c3ltoB_ PDB info PDB header:lyase Chain: B: PDB Molecule:mevalonate diphosphate decarboxylase; PDBTitle: crystal structure of a mevalonate diphosphate decarboxylase2 from legionella pneumophila Resolution 2.27 Å

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		3	.	.	.	.	.	.	10	.	.	.				.									.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.					.	60	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.		.	.	.	.	.	.	.	.																																													.	.	.	.
Query SS confidence													.	.	.		.	.	.	.	.	.	.	.																																													.	.	.	.
Query Sequence		K	V	Y	A	P	A	S	S	A	N	M	.	.	.	S	.	.	.	.	.	.	.	.	V	G	F	D	V	L	G	A	A	V	T	P	V	D	G	A	L	L	G	D	V	V	T	V	E	A	A	E	T	F	S	L	N	N	L	G	R	F	A	D	K	L	P	S	.	.	.	.	E	P	R	E	N	I	V	Y	Q
Query Conservation													.	.	.		.	.	.	.	.	.	.	.																																													.	.	.	.
Alig confidence													.	.	.		.	.	.	.	.	.	.	.												.	.	.	.	.																													.	.	.	.
Template Conservation																																				.	.	.	.	.
Template Sequence		F	A	Q	A	P	A	N	I	A	L	I	K	Y	X	G	K	K	D	E	N	S	N	L	P	D	N	S	S	L	S	Y	T	L	S	.	.	.	.	.	N	L	L	S	S	V	K	L	E	K	L	P	T	K	K	D	I	W	E	P	L	T	I	P	G	A	P	E	F	N	L	S	V	E	A	Q	K	R	F	I	D
Template Known Secondary structure															T	T		B		T	T	T			B	S	S									.	.	.	.	.												S	S	S	S						B		T	T	S		B						S
Template Predicted Secondary structure																																				.	.	.	.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.						.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.						.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure																																																	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.
Query Sequence		C	W	E	R	F	C	Q	E	L	G	K	Q	I	P	V	A	M	T	L	E	K	N	M	P	I	G	S	G	L	G	S	S	A	C	S	V	V	A	A	L	M	A	M	N	E	H	C	.	.	.	.	.	G	K	P	L	N	D	T	R	L	L	A	L	M	G	E	L	E	G	R	I	S	G	S	I	H	Y	D	N
Query Conservation																																																	.	.	.	.	.
Alig confidence																																																	.	.	.	.	.																		.	.	.	.	.	.	.	.	.
Template Conservation																																																																							.	.	.	.	.	.	.	.	.
Template Sequence		H	L	V	R	L	K	E	Y	F	G	Y	V	G	G	F	L	I	Q	S	S	N	N	F	P	H	S	S	G	L	A	S	S	A	S	S	F	A	A	L	T	K	C	A	S	I	A	L	S	E	L	T	Q	K	P	L	P	S	I	D	E	Q	A	Q	L	S	R	L	G	S	.	.	.	.	.	.	.	.	.	G	S
Template Known Secondary structure										T	T												S	S			S	S	S																								T																		.	.	.	.	.	.	.	.	.	G	G
Template Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.										.	.
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.			.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.		.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.																													.
Query SS confidence																																				.	.																													.
Query Sequence		V	A	P	C	F	L	G	G	M	Q	L	M	I	E	E	N	D	I	I	S	Q	Q	V	P	G	F	D	E	W	L	W	V	L	A	.	.	Y	P	G	I	K	V	S	T	A	E	A	R	A	I	L	P	A	Q	Y	R	R	Q	D	C	I	A	H	G	.	R	H	L	A	G	F	I	H	A	C	Y	S	R	Q	P
Query Conservation																																				.	.																													.
Alig confidence														.																						.	.																													.
Template Conservation														.
Template Sequence		S	C	R	S	F	Y	A	P	W	A	L	W	.	T	G	D	K	V	S	A	I	D	L	P	Y	K	D	L	L	H	Q	V	I	V	I	S	S	Q	E	K	E	I	P	S	R	V	A	H	K	L	V	K	T	S	P	F	Y	E	T	R	S	E	R	A	E	A	N	L	K	L	L	L	N	A	F	E	N	K	D	W
Template Known Secondary structure		G	G	G	G	G	S		S					.		T	T								S			S												T	T											G	G	G	S	T	T	T	T	T																		T	T
Template Predicted Secondary structure														.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		220	.	.	.	.	.	.	.	.										.	230	.	.	.	.	.	.	.	.	.	240	.					.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.														.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.														.	.	.	.
Query Sequence		E	L	A	A	K	L	M	K	D	.	.	.	.	.	.	.	.	.	V	I	A	E	P	Y	R	E	R	L	L	P	G	.	.	.	.	F	R	Q	A	R	Q	A	V	A	E	I	G	A	V	A	S	G	I	S	G	S	G	P	T	L	F	A	L	C	D	K	P	E	T	A	Q	R	V	A	D	W	L	G	K	N
Query Conservation											.	.	.	.	.	.	.	.	.														.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.														.	.	.	.																															.
Template Conservation																																																																			.
Template Sequence		T	S	I	Y	Q	I	C	W	H	E	F	L	D	X	H	Q	L	F	K	T	C	E	K	P	F	S	Y	I	T	D	N	T	L	H	I	L	S	V	I	E	K	F	W	N	E	K	G	D	G	P	V	V	T	X	D	A	G	P	N	V	H	L	L	Y	R	.	S	D	Q	T	D	L	A	R	Q	F	K	S	D	H
Template Known Secondary structure																					T	S	S	S				S																				S									S	S	S								.	G	G	G
Template Predicted Secondary structure																																																																			.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.		.	.	.	.	.	.	.	.	310	.	.	.	.	.
		287	.	.	290	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L	Q	N	Q	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	V	G	N	Y	D
Template Known Secondary structure		T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		316	.	.	.	320	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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