Job Description P00547 Confidence 100.00% Date Thu Jan 5 10:56:41 GMT 2012 Rank 13 Aligned Residues 277 % Identity 22% Template c3k85B_ PDB info PDB header:transferase Chain: B: PDB Molecule:d-glycero-d-manno-heptose 1-phosphate kinase; PDBTitle: crystal structure of a d-glycero-d-manno-heptose 1-phosphate2 kinase from bacteriodes thetaiotaomicron Resolution 2.28 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.												.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50										.	.	.	.	.	.	.	.	.	60
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.
Query Sequence		M	V	K	V	Y	A	P	A	S	S	A	N	M	S	V	G	F	D	.	.	.	.	.	.	.	.	.	.	.	V	L	G	A	A	V	T	P	V	D	G	A	L	L	G	D	V	V	T	V	E	A	A	E	T	F	S	L	N	N	L	G	.	.	.	.	.	.	.	.	.	R	F	A	D	K	L	P	S	E	P
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.																.	.	.	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.
Template Sequence		L	V	R	S	K	A	P	L	R	L	G	L	A	G	G	G	S	D	V	S	P	Y	S	D	I	Y	G	G	L	I	L	N	A	T	I	N	L	Y	A	Y	.	.	.	.	.	.	C	T	I	E	E	T	N	S	G	R	I	E	I	N	A	Y	D	A	Q	C	C	K	S	Y	L	S	X	S	Q	L	E	I	D	G
Template Known Secondary structure																T	T	T	T	S	T	T																				.	.	.	.	.	.							S	S	S							G	G	G	T									S	S					S
Template Predicted Secondary structure																																										.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.							.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80		.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		R	E	N	I	V	Y	Q	C	W	E	R	F	C	Q	E	L	G	K	Q	I	.	P	V	A	M	T	L	E	K	N	M	P	I	G	S	G	L	G	S	S	A	C	S	V	V	A	A	L	M	A	M	N	E	H	C	G	K	P	L	N	D	T	R	L	L	A	L	M	G	E	L	E	G	R	I	S	G	S	I	H
Query Conservation																						.
Alig confidence																						.
Template Conservation
Template Sequence		E	A	S	L	I	K	G	V	Y	N	R	I	I	R	D	Y	R	L	E	P	K	S	F	K	I	T	T	Y	N	D	A	P	A	G	S	G	L	G	T	S	S	T	X	V	V	C	I	L	K	A	F	I	E	W	L	S	L	P	L	G	D	Y	E	T	S	R	L	A	Y	E	I	E	R	K	D	L	G	L	S	G
Template Known Secondary structure		S	S															T													S	S		S	S	T	T	S																			T																		T	T	T
Template Predicted Secondary structure
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		140		.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.			160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure			.																				.	.
Query SS confidence			.																				.	.
Query Sequence		Y	.	D	N	V	A	P	C	F	L	G	G	M	Q	L	M	I	E	E	N	D	.	.	I	I	S	Q	Q	V	P	G	F	D	E	W	L	W	V	L	A	Y	P	G	I	K	V	S	T	A	E	A	R	A	I	L	P	A	Q	Y	R	R	Q	D	C	I	A	H	G	R	H	L	A	G	F	I	H	A	C	Y	S
Query Conservation			.																				.	.
Alig confidence			.																				.	.																																			.	.	.	.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.	.	.	.	.
Template Sequence		G	K	Q	D	Q	Y	A	A	A	F	G	G	F	N	Y	X	E	F	L	Q	N	D	L	V	I	V	N	P	L	K	X	K	R	W	I	V	D	E	L	E	S	S	X	V	L	Y	F	T	Q	T	A	I	E	A	X	H	K	.	.	.	.	.	.	.	.	.	I	K	Q	S	A	I	D	T	K	L	A	L	L	K
Template Known Secondary structure			S										S								T	T	T																				T																.	.	.	.	.	.	.	.	.														T
Template Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.										.	.	.	.	.	.	.	220	.	.	.	.	.	.
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	P	E	L	A	A	K	L	M	K	D	V	I	A	E	P	Y	R	E	R	L	L	P	G	F	R	Q	A	R	Q	A	V	A	E	I	G	A	V	A	S	G	I	S	G	S	G	P	T	L	F	A	L	C	D	K	P	E	T	A	Q	R	V	A	D	W	L	G	K	N	Y	L	Q	N	Q	E	G	F	V	H
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.																															.	.																.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.																															.	.																.	.	.	.	.
Template Sequence		G	D	V	G	E	F	A	R	I	L	G	E	G	W	E	.	.	.	.	.	.	.	.	N	K	K	K	E	A	F	D	V	A	T	G	A	G	A	X	A	G	K	V	S	G	A	G	F	I	X	F	V	V	.	.	E	P	T	R	K	E	E	V	V	R	A	L	N	N	L	.	.	.	.	.	N	G	F	V	X
Template Known Secondary structure		T															.	.	.	.	.	.	.	.		T	T				S						T			S															.	.															S	.	.	.	.	.	S	S
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.																															.	.																.	.	.	.	.
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.									.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.			.	.	.	.	.	.	.	300	.	.	.	.	.	.	.						.	.	310	.	.
		297	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	C	R	L	D	T	A	G	A	R	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	F	Q	F	I	D	D	G	A	H	G
Template Known Secondary structure					B
Template Predicted Secondary structure
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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