Job Description P00547 Confidence 100.00% Date Thu Jan 5 10:56:41 GMT 2012 Rank 6 Aligned Residues 295 % Identity 18% Template c3k17A_ PDB info PDB header:transferase Chain: A: PDB Molecule:lin0012 protein; PDBTitle: crystal structure of a lin0012 protein from listeria innocua Resolution 2.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10							.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.									.	.	.	.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.																																												.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.																																												.	.	.	.	.	.	.	.
Query Sequence		V	K	V	Y	A	P	A	S	S	.	.	.	.	.	.	A	N	M	S	V	G	F	D	V	L	G	A	A	V	T	P	V	D	G	A	L	L	G	D	V	V	T	V	E	A	A	E	T	F	S	L	N	N	L	G	R	F	A	.	.	.	.	.	.	.	.	D	K	L	P	S	E	P	R	E	N	I	V	Y	Q
Query Conservation											.	.	.	.	.	.																																												.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.																				.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.
Template Sequence		L	Q	V	K	I	P	G	K	L	Y	V	A	G	E	Y	A	V	V	E	S	G	H	T	A	I	L	T	A	V	N	R	Y	I	T	.	.	.	.	.	.	L	T	L	E	D	S	E	R	N	E	L	W	I	P	H	Y	E	N	P	V	S	W	P	I	G	G	E	L	K	P	D	G	E	H	W	T	F	T	A	E
Template Known Secondary structure															T	T	G	G	G	S	T	T														.	.	.	.	.	.							S	S						T	T		S	S		B				T	T	S					S		G	G	G
Template Predicted Secondary structure																																				.	.	.	.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.							.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		68	.	70	.	.	.	.	.	.	.	.	.	80									.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.
Query Sequence		C	W	E	R	F	C	Q	E	L	G	K	Q	I	.	.	.	.	.	.	.	.	P	V	A	M	T	L	E	K	N	M	P	I	G	S	G	L	G	S	S	A	C	S	V	V	A	A	L	M	A	M	N	E	H	C	G	K	P	L	N	D	T	R	L	L	A	L	M	G	E	L	E	G	R	I	S	G	S	I	H
Query Conservation															.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	I	N	I	A	T	T	F	L	K	S	E	G	I	E	L	T	P	V	K	X	V	I	E	T	E	L	I	D	Q	S	G	A	K	Y	G	L	G	S	S	A	A	A	T	V	A	V	I	N	A	L	X	T	K	F	Y	P	E	I	S	X	L	K	K	F	K	L	A	A	L	S	H	L	V	V	Q	G	N	G	S
Template Known Secondary structure													T	T													S	S	B		T	T	S		B		S	S																				T	T	S																		S	S
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.																						.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	D	N	V	A	P	C	F	L	G	G	M	Q	L	M	I	E	E	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	I	I	S	Q	Q	V	P	G	F	D	E	W	L	W	V	L	A	Y	P	G	I	K	V	S	T	A	E	A	R	A	I	L	P	A	Q	Y	R	R	Q
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		C	G	D	I	A	S	C	X	Y	G	G	W	I	A	Y	T	T	F	D	Q	E	W	V	K	H	R	L	A	Y	K	S	L	E	W	F	X	K	E	P	W	P	X	L	Q	I	E	T	L	E	E	P	V	P	T	F	S	V	G	W	T	G	T	P	V	S	T	G	K	L	V	S	Q	I	H	A	F	K	Q	E	D
Template Known Secondary structure		S										S																	T	T	S								S			T	T										S	S								S
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		199	200	.	.	.							.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.								.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure							.	.	.	.	.	.																																		.	.	.	.	.	.	.																												.	.
Query SS confidence							.	.	.	.	.	.																																		.	.	.	.	.	.	.																												.	.
Query Sequence		D	C	I	A	H	.	.	.	.	.	.	G	R	H	L	A	G	F	I	H	A	C	Y	S	R	Q	P	E	L	A	A	K	L	M	K	D	V	I	A	E	P	Y	R	E	.	.	.	.	.	.	.	R	L	L	P	G	F	R	Q	A	R	Q	A	V	A	E	I	G	A	V	A	S	G	I	S	G	S	G	.	.
Query Conservation							.	.	.	.	.	.																																		.	.	.	.	.	.	.																												.	.
Alig confidence							.	.	.	.	.	.																																		.	.	.	.	.	.	.																			.									.	.
Template Conservation																																																																							.
Template Sequence		S	K	N	Y	Q	H	F	L	T	R	N	N	E	I	X	K	Q	I	I	Q	A	F	H	T	K	D	E	E	L	L	Y	S	S	I	K	E	N	R	R	I	L	Q	E	L	G	T	K	A	G	V	N	I	E	T	S	L	L	K	E	L	A	D	S	A	E	N	X	G	G	.	A	G	K	S	S	G	S	G	G	G
Template Known Secondary structure																										T																								T				S														T	T	S	.						T	T		S	S
Template Predicted Secondary structure																																																																							.
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.		.	.	.	.	.	.	.	.	320	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	T	L	F	A	L	C	D	K	P	E	T	A	Q	R	V	A	D	W	L	G	K	N	Y	L	Q	N	Q	E	G	F	V	H	I	C	R	L	D	T	A	G
Query Conservation
Alig confidence																																							.
Template Conservation																																							.
Template Sequence		D	C	G	I	A	F	S	K	T	K	E	L	A	E	K	L	V	N	E	W	E	K	L	G	I	K	H	L	P	F	H	T	G	R	V	Q	I	.	T	E	G
Template Known Secondary structure		S							S	S														T	T								B						.
Template Predicted Secondary structure																																							.
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.		.	360	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions