Job Description P00547 Confidence 99.75% Date Thu Jan 5 10:56:41 GMT 2012 Rank 35 Aligned Residues 286 % Identity 14% Template c3f0nB_ PDB info PDB header:lyase Chain: B: PDB Molecule:mevalonate pyrophosphate decarboxylase; PDBTitle: mus musculus mevalonate pyrophosphate decarboxylase Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.				.									.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.		.	.	.	.	.	.	.	.
Query SS confidence															.	.	.		.	.	.	.	.	.	.	.
Query Sequence		M	V	K	V	Y	A	P	A	S	S	A	N	M	.	.	.	S	.	.	.	.	.	.	.	.	V	G	F	D	V	L	G	A	A	V	T	P	V	D	G	A	L	L	G	D	V	V	T	V	E	A	A	E	T	F	S	L	N	N	L	G	R	F	A	D	K	L	P	S	E	P	R	E	N	I	V	Y	Q	C	W
Query Conservation															.	.	.		.	.	.	.	.	.	.	.
Alig confidence															.	.	.		.	.	.	.	.	.	.	.															.	.	.																																.	.
Template Conservation																																									.	.	.																																.	.
Template Sequence		M	V	T	C	T	A	P	V	N	I	A	V	I	K	Y	W	G	K	R	D	E	A	L	I	L	P	I	N	S	S	L	S	V	T	L	H	Q	D	Q	.	.	.	L	K	T	T	T	T	V	A	I	S	K	D	F	T	E	D	R	I	W	L	N	G	R	E	E	D	V	G	Q	P	R	.	.	L	Q	A	C	L
Template Known Secondary structure																						T	T	T	T			S	S							B		T	T	T	.	.	.	S										S	S			S						T	T					T	T				.	.
Template Predicted Secondary structure																																									.	.	.																																.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.				.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.			.	80	.	.	.
		70	.	.	.	.	.	.						.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure									.	.	.	.	.
Query SS confidence									.	.	.	.	.
Query Sequence		E	R	F	C	Q	E	L	.	.	.	.	.	G	K	Q	I	P	V	A	M	T	L	E	K	N	M	P	I	G	S	G	L	G	S	S	A	C	S	V	V	A	A	L	M	A	M	N	E	H	C	G	K	P	L	N	D	T	R	L	L	A	L	M	G	E	L	E	G	R	I	S	G	S	I	H	Y	D	N	V	A
Query Conservation									.	.	.	.	.
Alig confidence									.	.	.	.	.																	.	.	.	.	.																														.	.	.	.	.	.	.	.	.					.	.	.
Template Conservation																														.	.	.	.	.																														.	.	.	.	.	.	.	.	.					.	.	.
Template Sequence		R	E	I	R	R	L	A	R	K	R	R	L	S	L	S	Y	K	V	H	V	A	S	V	N	N	F	P	A	.	.	.	.	.	S	S	A	A	G	Y	A	C	L	A	Y	T	L	A	Q	V	Y	G	V	E	G	D	L	S	E	V	A	R	R	.	.	.	.	.	.	.	.	.	G	S	G	S	.	.	.	A	C
Template Known Secondary structure														G	G	G														.	.	.	.	.																		T			S									.	.	.	.	.	.	.	.	.			G	G	.	.	.	G	G
Template Predicted Secondary structure																														.	.	.	.	.																														.	.	.	.	.	.	.	.	.					.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.						.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140										.	.	.	.				.	.
		145	.	.	.	.	150	.	.	.	.	.	.	.	.									.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.					.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.			.	.	.	.	.	.	210
Predicted Secondary structure																.	.	.	.	.	.	.	.																									.	.	.	.																						.	.
Query SS confidence																.	.	.	.	.	.	.	.																									.	.	.	.																						.	.
Query Sequence		P	C	F	L	G	G	M	Q	L	M	I	E	E	N	.	.	.	.	.	.	.	.	D	I	I	S	Q	Q	V	P	G	F	D	E	W	L	W	V	L	A	Y	P	G	I	K	V	.	.	.	.	S	T	A	E	A	R	A	I	L	P	A	Q	Y	R	R	Q	D	C	I	A	H	.	.	G	R	H	L	A	G	F
Query Conservation																.	.	.	.	.	.	.	.																									.	.	.	.																						.	.
Alig confidence																.	.	.	.	.	.	.	.																									.	.	.	.																						.	.
Template Conservation
Template Sequence		R	S	L	Y	G	G	F	V	E	W	Q	M	G	E	Q	A	D	G	K	D	S	I	A	R	Q	I	A	P	E	W	H	W	P	Q	L	R	I	L	I	L	V	V	S	A	D	K	K	Q	T	G	S	T	V	G	M	Q	T	S	V	E	T	S	T	L	L	K	F	R	A	E	S	V	V	P	E	R	M	K	E	M
Template Known Secondary structure		G	G	G	S	S	S								S		T	T		T	T									T	T	S		T	T															S																							T
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.										.	240	.	.	.	.	.	.	.	.	.						250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.												.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.												.	.	.	.	.
Query Sequence		I	H	A	C	Y	S	R	Q	P	E	L	A	A	K	L	M	K	D	V	I	A	E	P	Y	R	E	R	L	.	.	.	.	.	.	.	.	.	L	P	G	F	R	Q	A	R	Q	A	V	.	.	.	.	.	A	E	I	G	A	V	A	S	G	I	S	G	S	G	P	T	L	F	A	L	C	D	K	P	E	T	A
Query Conservation																														.	.	.	.	.	.	.	.	.												.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.												.	.	.	.	.																							.
Template Conservation																																																																													.
Template Sequence		T	R	C	I	Q	E	Q	D	F	Q	G	F	A	Q	L	T	M	K	D	S	N	Q	F	H	A	T	C	L	D	T	F	P	P	I	S	Y	L	N	D	T	S	R	R	I	I	Q	L	V	H	R	F	N	T	H	H	G	Q	T	K	V	A	Y	T	F	D	A	G	P	N	A	V	I	F	T	L	.	E	D	T	V
Template Known Secondary structure							T	T																						T	S	S	S																								T	S									S	S	S								.	G	G	G
Template Predicted Secondary structure																																																																													.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.		.	.	.	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.																													.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	R	V	A	D	W	L	G	K	N	Y	L	Q	N	Q	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	F	V	H	I	C	R	L	D	T	A	G	A	R	V	L	E	N
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.
Template Conservation																																																						.
Template Sequence		A	E	F	V	A	A	V	R	H	S	F	P	P	A	A	N	K	F	L	K	G	L	Q	V	A	P	V	L	L	S	D	E	L	K	A	A	L	V	P	S	P	G	G	V	Q	Y	I	I	A	T	Q	V	.	G	P	G	P	Q	V	L	D	D
Template Known Secondary structure												S											S																			T	T	S									B	.									T
Template Predicted Secondary structure																																																						.
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.		.	.	.	.	.	.	.	.	380

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions