Job Description P00547 Confidence 100.00% Date Thu Jan 5 10:56:41 GMT 2012 Rank 15 Aligned Residues 295 % Identity 22% Template c2a2cA_ PDB info PDB header:transferase Chain: A: PDB Molecule:n-acetylgalactosamine kinase; PDBTitle: x-ray structure of human n-acetyl galactosamine kinase2 complexed with mg-adp and n-acetyl galactosamine 1-3 phosphate Resolution 1.65 Å

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		4	.	.	.	.	.	10	.	.	.	.						.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.												.	.	.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	Y	A	P	A	S	S	A	N	M	S	.	.	.	.	.	V	G	F	D	V	L	G	A	A	V	T	P	V	D	G	A	L	L	G	D	V	V	T	V	E	A	A	E	T	F	S	L	N	N	L	G	R	F	A	D	.	.	.	.	.	.	.	.	.	.	.	K	L	P	S	E	P	R	E	N	I	V	Y	Q
Query Conservation													.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.																.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.
Template Sequence		V	R	A	P	G	R	V	N	I	I	G	E	H	I	D	Y	C	G	Y	S	V	L	P	M	A	V	E	Q	D	V	L	.	.	.	.	.	.	I	A	V	E	P	V	K	T	Y	A	L	Q	L	A	N	T	N	P	L	Y	P	D	F	S	T	S	A	N	N	I	D	K	T	K	P	L	W	H	N	Y	F	L	C
Template Known Secondary structure													T	T		G	G	G	T			B											.	.	.	.	.	.							S	S	S							S	S	T	T	S													S	S
Template Predicted Secondary structure																																	.	.	.	.	.	.
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.							.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		68	.	70	.	.	.	.	.	.	.	.	.			80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure														.	.
Query SS confidence														.	.
Query Sequence		C	W	E	R	F	C	Q	E	L	G	K	Q	.	.	I	P	V	A	M	T	L	E	K	N	M	P	I	G	S	G	L	G	S	S	A	C	S	V	V	A	A	L	M	A	M	N	E	H	C	G	K	P	L	N	D	T	R	L	L	A	L	M	G	E	L	E	G	R	I	S	G	S	I	H	Y	D	N	V	A	P
Query Conservation														.	.
Alig confidence														.	.
Template Conservation
Template Sequence		G	L	K	G	I	Q	E	H	F	G	L	S	N	L	T	G	M	N	C	L	V	D	G	N	I	P	P	S	S	G	L	S	S	S	S	A	L	V	C	C	A	G	L	V	T	L	T	V	L	G	R	N	L	S	K	V	E	L	A	E	I	C	A	K	S	E	R	Y	I	G	T	E	G	G	G	M	D	Q	S	I
Template Known Secondary structure										T	T			S												S		T	T	S	S	S																			T																	G	G	G	T					S
Template Predicted Secondary structure
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		146	.	.	.			150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure						.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		C	F	L	G	.	.	G	M	Q	L	M	I	E	E	N	D	I	I	S	Q	Q	V	P	G	F	D	E	W	L	W	V	L	A	Y	P	G	I	K	V	S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation						.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	F	L	A	E	E	G	T	A	K	L	I	E	F	S	P	L	R	A	T	D	V	K	L	P	S	G	A	V	F	V	I	A	N	S	C	V	E	M	N	K	A	A	T	S	H	F	N	I	R	V	M	E	C	R	L	A	A	K	L	L	A	K	Y	K	S	L	Q	W	D	K	V	L	R	L	E	E	V	Q	A
Template Known Secondary structure						B	T	T	B						T	T	T	T									T	T														G	G	G	S	S																				T	T			T	T	T
Template Predicted Secondary structure
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
								185	.	.	.	.	190	.	.	.	.	.	.	.																																									.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.
Query SS confidence		.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.
Query Sequence		.	.	.	.	.	.	A	E	A	R	A	I	L	P	A	Q	Y	R	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	D	C	I	A	H	G	R	H	L	A	G	F	I	H	A	C	Y	.	.	.
Query Conservation		.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.
Alig confidence		.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.
Template Conservation
Template Sequence		K	L	G	I	S	L	E	E	M	L	L	V	T	E	D	A	L	H	P	E	P	Y	N	P	E	E	I	C	R	C	L	G	I	S	L	E	E	L	R	T	Q	I	L	S	P	N	T	Q	D	V	L	I	F	K	L	Y	Q	R	A	K	H	V	Y	S	E	A	A	R	V	L	Q	F	K	K	I	C	E	E	A	P
Template Known Secondary structure				T														S		S	S		B										T										T	S		G	G	G	T	T				B
Template Predicted Secondary structure
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.			.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.			.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure																						.	.																														.	.
Query SS confidence																						.	.																														.	.
Query Sequence		S	R	Q	P	E	L	A	A	K	L	M	K	D	V	I	A	E	P	Y	R	.	.	E	R	L	L	P	G	F	R	Q	A	R	Q	A	V	A	E	I	G	A	V	A	S	G	I	S	G	S	G	P	.	.	T	L	F	A	L	C	D	K	P	E	T	A	Q	R	V	A	D	W	L	G	K	N	Y	L	Q	N	Q
Query Conservation																						.	.																														.	.
Alig confidence																						.	.																														.	.										.
Template Conservation																																																																.
Template Sequence		E	N	M	V	Q	L	L	G	E	L	M	N	Q	S	H	M	S	C	R	D	M	Y	E	C	S	C	P	E	L	D	Q	L	V	D	I	C	R	K	F	G	A	Q	G	S	R	L	T	G	A	G	W	G	G	C	T	V	S	M	V	P	A	D	.	K	L	P	S	F	L	A	N	V	H	K	A	Y	Y	Q	K	Q
Template Known Secondary structure		T	T																			T	S																	T	T		S						T	T		S	S	S								G	G	.	G
Template Predicted Secondary structure																																																																.
Template SS confidence
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.		.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	F	V	H	I	C	R	L	D	T	A	G	A	R	V	L
Query Conservation
Alig confidence			.	.							.
Template Conservation			.	.							.
Template Sequence		S	.	.	L	F	A	T	K	P	.	G	G	G	A	L	V	L
Template Known Secondary structure		S	.	.							.	B
Template Predicted Secondary structure			.	.							.
Template SS confidence
		442			.	.	.	.	.	.		.	450	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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