Job Description P00547 Confidence 100.00% Date Thu Jan 5 10:56:41 GMT 2012 Rank 11 Aligned Residues 259 % Identity 19% Template c1oj4B_ PDB info PDB header:transferase Chain: B: PDB Molecule:4-diphosphocytidyl-2-c-methyl-d-erythritol PDBTitle: ternary complex of2 4-diphosphocytidyl-2-c-methyl-d-erythritol kinase Resolution 2.01 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.									.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.
Query Sequence		V	K	V	Y	A	P	A	S	S	A	N	M	S	.	.	.	.	.	.	.	.	V	G	F	D	V	L	G	A	A	V	T	P	V	D	G	A	L	L	G	D	V	V	T	V	E	A	A	E	T	F	S	L	N	N	L	G	R	F	A	D	K	L	P	S	E	P	R	E	N	I	V	Y	Q	C	W	E	R	F	C
Query Conservation															.	.	.	.	.	.	.	.
Alig confidence											.				.	.	.	.	.	.	.	.								.	.	.																											.	.	.
Template Conservation											.																			.	.	.																											.	.	.
Template Sequence		T	Q	W	P	S	P	A	K	L	.	N	L	F	L	Y	I	T	G	Q	R	A	D	G	Y	H	T	L	Q	.	.	.	T	L	F	Q	F	L	D	Y	G	D	T	I	S	I	E	L	R	D	D	G	D	I	R	L	L	T	.	.	.	P	V	E	G	V	E	H	E	D	N	L	I	V	R	A	A	R	L	L	X
Template Known Secondary structure											.											T	T	S						.	.	.																		S	S	S						S	.	.	.		B	T	T	B		G	G	G	S
Template Predicted Secondary structure											.																			.	.	.																											.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.		.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.				30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.				.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		74	.	.	.	.	.							80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.
Query Sequence		Q	E	L	G	K	Q	.	.	.	.	.	.	I	P	V	A	M	T	L	E	K	N	M	P	I	G	S	G	L	G	S	S	A	C	S	V	V	A	A	L	M	A	M	N	E	H	C	G	K	P	L	N	D	T	R	L	L	A	L	M	G	E	L	E	G	R	I	S	G	S	I	H	Y	D	N	V	A	P	C	F
Query Conservation								.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.																																																					.	.	.	.	.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.	.	.	.	.
Template Sequence		K	T	A	A	D	S	G	R	L	P	T	G	S	G	A	N	I	S	I	D	K	R	L	P	X	G	G	G	L	G	G	G	S	S	N	A	A	T	V	L	V	A	L	N	H	L	W	Q	C	G	L	S	X	D	E	L	A	E	X	G	L	T	L	G	.	.	.	.	.	.	.	.	.	A	D	V	P	V	F	V
Template Known Secondary structure							T	T		S		T	T											S		S	S	T	T	S																		T	T																	.	.	.	.	.	.	.	.	.	T	T
Template Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.										140	.	.	.	.	.	.
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	G	M	Q	L	M	I	E	E	N	D	I	I	S	Q	Q	V	P	G	F	D	E	W	L	W	V	L	A	Y	P	G	I	K	V	S	T	A	E	A	R	A	I	L	P	A	Q	Y	R	R	Q	D	C	I	A	H	G	R	H	L	A	G	F	I	H	A	C	Y	S	R	Q	P	E	L	A	A	K	L	M	K
Query Conservation
Alig confidence																				.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	G	H	A	A	F	A	E	G	V	G	E	I	L	T	P	V	D	.	.	P	P	E	K	W	Y	L	V	A	H	P	G	V	S	I	P	T	P	V	I	F	K	D	P	E	L	P	R	N	T	P	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	S	I	E	T	L	L	K	C	E	F
Template Known Secondary structure			T	B						T	T	T	T							.	.												S										T		T	T	S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									S
Template Predicted Secondary structure																				.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.			.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.																		.	.	.	200	.	.	.	.	.	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	I	A	E	P	Y	R	E	R	L	L	P	G	F	R	Q	A	R	Q	A	V	A	E	I	G	A	V	A	S	G	I	S	G	S	G	P	T	L	F	A	L	C	D	K	P	E	T	A	Q	R	V	A	D	W	L	G	K	N	Y	L	Q	N	Q	E	G	F	V	H	I	C	R	L
Query Conservation
Alig confidence																													.	.																																	.	.	.
Template Conservation																													.	.																																	.	.	.
Template Sequence		S	N	D	C	E	V	I	A	R	K	R	F	R	E	V	D	A	V	L	S	W	L	L	E	Y	A	P	.	.	S	R	L	T	G	T	G	A	C	V	F	A	E	F	D	T	E	S	E	A	R	Q	V	L	E	Q	A	P	E	W	L	N	.	.	.	G	F	V	A	K	G	V	N	L
Template Known Secondary structure			B	T	T																				T	T	S		.	.					T	T	S	S							S	S											S		G	G	G		.	.	.								S	B
Template Predicted Secondary structure																													.	.																																	.	.	.
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.			.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.				.	.	.	270	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions