Job Description P00547 Confidence 100.00% Date Thu Jan 5 10:56:41 GMT 2012 Rank 18 Aligned Residues 286 % Identity 15% Template c1kkhA_ PDB info PDB header:transferase Chain: A: PDB Molecule:mevalonate kinase; PDBTitle: crystal structure of the methanococcus jannaschii2 mevalonate kinase Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.						.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.														.	.	.	60	.	.	.
Predicted Secondary structure															.	.	.	.	.																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	K	V	Y	A	P	A	S	S	A	N	M	S	.	.	.	.	.	V	G	F	D	V	L	G	A	A	V	T	P	V	D	G	A	L	L	G	D	V	V	T	V	E	A	A	E	T	F	S	L	N	N	L	G	R	F	A	D	K	L	.	.	.	.	.	.	.	.	.	.	.	.	.	P	S	E	P	R	E	N
Query Conservation															.	.	.	.	.																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.																.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.
Template Sequence		M	I	I	E	T	P	S	K	V	I	L	F	G	E	H	A	V	V	Y	G	Y	R	A	I	S	M	A	I	D	L	T	S	T	.	.	.	.	.	.	I	E	I	K	E	T	Q	E	D	E	I	I	L	N	L	N	D	L	N	K	S	L	G	L	N	L	N	E	I	K	N	I	N	P	N	N	F	G	D	F	K
Template Known Secondary structure															T	T	G	G	G	G	T														.	.	.	.	.	.								S	S							T	T	T	T							T	T	T	G	G	G			G	G	G	S	G	G	G
Template Predicted Secondary structure																																			.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.							.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.			80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure																		.	.
Query SS confidence																		.	.
Query Sequence		I	V	Y	Q	C	W	E	R	F	C	Q	E	L	G	K	Q	.	.	I	P	V	A	M	T	L	E	K	N	M	P	I	G	S	G	L	G	S	S	A	C	S	V	V	A	A	L	M	A	M	N	E	H	C	G	K	P	L	N	D	T	R	L	L	A	L	M	G	E	L	E	G	R	I	S	G	S	I	H	Y	D
Query Conservation																		.	.
Alig confidence																		.	.
Template Conservation
Template Sequence		Y	C	L	C	A	I	K	N	T	L	D	Y	L	N	I	E	P	K	T	G	F	K	I	N	I	S	S	K	I	P	I	S	C	G	L	G	S	S	A	S	I	T	I	G	T	I	K	A	V	S	G	F	Y	N	K	E	L	K	D	D	E	I	A	K	L	G	Y	M	V	E	K	E	I	Q	G	K	A	S	I	T
Template Known Secondary structure														T	T					S										S		S	S	S	S	S																	T	T	T																				S	S	S			S
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.				.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.
Query SS confidence																								.	.	.
Query Sequence		N	V	A	P	C	F	L	G	G	M	Q	L	M	I	E	E	N	D	I	I	S	Q	.	.	.	Q	V	P	G	F	D	E	W	L	W	V	L	A	Y	P	G	I	K	V	S	T	A	E	A	R	A	I	L	P	A	Q	Y	R	R	Q	D	C	I	A	H	G	R	H	L	A	G	F	I	H	A	C	Y	S	R	Q
Query Conservation																								.	.	.
Alig confidence																								.	.	.																																												.	.
Template Conservation																																																																						.	.
Template Sequence		D	T	S	T	I	T	Y	K	G	I	L	E	I	K	N	N	K	F	R	K	I	K	G	E	F	E	E	F	L	K	N	C	K	F	L	I	V	Y	A	E	K	R	K	K	K	T	A	E	L	V	N	E	V	A	K	I	E	N	K	D	E	I	F	K	E	I	D	K	.	.	V	I	D	E	A	L	K	I	K	N
Template Known Secondary structure										S					S	S	S															T													S											T		T	T											.	.										S
Template Predicted Secondary structure																																																																						.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.			.	.	230	.	.	.	.	.	.	.
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.		.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.			.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure																			.																														.	.
Query SS confidence																			.																														.	.
Query Sequence		P	E	L	A	A	K	L	M	K	D	V	I	A	E	P	Y	R	.	E	R	L	L	P	G	F	R	Q	A	R	Q	A	V	A	E	I	G	A	V	A	S	G	I	S	G	S	G	P	.	.	T	L	F	A	L	C	D	K	P	E	T	A	Q	R	V	A	D	W	L	G	K	N	Y	L	Q	N	Q	E	G	F	V
Query Conservation																			.																														.	.
Alig confidence																			.																			.											.	.									.														.	.	.	.	.
Template Conservation																																						.																					.														.	.	.	.	.
Template Sequence		K	E	D	F	G	K	L	M	T	K	N	H	E	L	L	K	K	L	N	I	S	T	P	K	L	D	R	I	V	D	I	G	N	R	F	G	.	F	G	A	K	L	T	G	A	G	G	G	G	C	V	I	I	L	V	N	E	.	E	K	E	K	E	L	L	K	E	L	N	K	E	.	.	.	.	.	D	V	R	I
Template Known Secondary structure																		T	T	T																	S	.	S						S	S	S	S	S									G	.	G	G										T	S	.	.	.	.	.	S
Template Predicted Secondary structure																																						.																					.														.	.	.	.	.
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.		.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.		.	.	.	.	.	.	300	.	.	.	.	.	.						.	.	.	310
		296	.	.	.	300	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	I	C	R	L	D	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	N	C	R	M	M	N
Template Known Secondary structure						B
Template Predicted Secondary structure
Template SS confidence
		311	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions