Job Description P00547 Confidence 99.88% Date Thu Jan 5 10:56:41 GMT 2012 Rank 30 Aligned Residues 293 % Identity 17% Template c1fi4A_ PDB info PDB header:lyase Chain: A: PDB Molecule:mevalonate 5-diphosphate decarboxylase; PDBTitle: the x-ray crystal structure of mevalonate 5-diphosphate decarboxylase2 at 2.3 angstrom resolution. Resolution 2.27 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.				.									.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.		.	.	.	.	.	.	.	.
Query SS confidence															.	.	.		.	.	.	.	.	.	.	.
Query Sequence		M	V	K	V	Y	A	P	A	S	S	A	N	M	.	.	.	S	.	.	.	.	.	.	.	.	V	G	F	D	V	L	G	A	A	V	T	P	V	D	G	A	L	L	G	D	V	V	T	V	E	A	A	E	T	F	S	L	N	N	L	G	R	F	A	D	K	L	P	S	E	P	R	E	N	I	V	Y	Q	C	W
Query Conservation															.	.	.		.	.	.	.	.	.	.	.
Alig confidence															.	.	.		.	.	.	.	.	.	.	.															.	.	.																																.	.
Template Conservation																																									.	.	.																																.	.
Template Sequence		T	A	S	V	T	A	P	V	N	I	A	T	L	K	Y	W	G	K	R	D	T	K	L	N	L	P	T	N	S	S	I	S	V	T	L	S	Q	D	D	.	.	.	L	R	T	L	T	S	A	A	T	A	P	E	F	E	R	D	T	L	W	L	N	G	E	P	H	S	I	D	N	E	R	.	.	T	Q	N	C	L
Template Known Secondary structure																						T	T	T	T			S	S							B		T	T	T	.	.	.	S										T	T			S		B		T	T	T			B	S	S	S	S	S	S	S	.	.
Template Predicted Secondary structure																																									.	.	.																																.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.				.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.			.	.	.	.	.
		70	.	.	.	.	.													.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	R	F	C	Q	E	.	.	.	.	.	.	.	.	.	.	.	.	L	G	K	Q	I	P	V	A	M	T	L	E	K	N	M	P	I	G	S	G	L	G	S	S	A	C	S	V	V	A	A	L	M	A	M	N	E	H	C	G	K	P	L	N	D	T	R	L	L	A	L	M	G	E	L	E	G	R	I	S	G	S
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.																																																													.	.
Template Conservation																																																																																.	.
Template Sequence		R	D	L	R	Q	L	R	K	E	X	E	S	K	D	A	S	L	P	T	L	S	Q	W	K	L	H	I	V	S	E	N	N	F	P	T	A	A	G	L	A	S	S	A	A	G	F	A	A	L	V	S	A	I	A	K	L	Y	Q	L	P	Q	S	T	S	E	I	S	R	I	A	R	K	G	S	G	S	A	C	.	.
Template Known Secondary structure													T	T		T	T	S			G	G	G	S												T	T	S																				T	T			S														G	G	G	G	.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.							.	.	.	.	.	160	.	.	.	.	.	.	.			.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.					.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.														.	.																	.	.	.	.																						.
Query SS confidence																			.	.	.	.	.	.														.	.																	.	.	.	.																						.
Query Sequence		I	H	Y	D	N	V	A	P	C	F	L	G	G	M	Q	L	M	.	.	.	.	.	.	I	E	E	N	D	I	I	S	Q	Q	V	P	G	.	.	F	D	E	W	L	W	V	L	A	Y	P	G	I	K	V	S	.	.	.	.	T	A	E	A	R	A	I	L	P	A	Q	Y	R	R	Q	D	C	I	A	H	G	.
Query Conservation																			.	.	.	.	.	.														.	.																	.	.	.	.																						.
Alig confidence		.	.	.	.	.	.	.											.	.	.	.	.	.														.	.																	.	.	.	.																						.
Template Conservation		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	R	S	L	F	G	G	Y	V	A	W	E	X	G	K	A	E	D	G	H	D	S	X	A	V	Q	I	A	D	S	S	D	W	P	Q	X	K	A	C	V	L	V	V	S	D	I	K	K	D	V	S	S	T	Q	G	X	Q	L	T	V	A	T	S	E	L	F	K	E	R	I	E	H	V	V
Template Known Secondary structure		.	.	.	.	.	.	.	G	G	G	S	S	S								S		T	T		T	T									G	G	G	S	T	T												S																	S								T
Template Predicted Secondary structure		.	.	.	.	.	.	.
Template SS confidence
									158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
			205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.										.	240	.	.	.	.	.	.	.	.	.						250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.																																			.	.	.	.	.	.	.	.	.												.	.	.	.	.
Query SS confidence		.																																			.	.	.	.	.	.	.	.	.												.	.	.	.	.
Query Sequence		.	R	H	L	A	G	F	I	H	A	C	Y	S	R	Q	P	E	L	A	A	K	L	M	K	D	V	I	A	E	P	Y	R	E	R	L	.	.	.	.	.	.	.	.	.	L	P	G	F	R	Q	A	R	Q	A	V	.	.	.	.	.	A	E	I	G	A	V	A	S	G	I	S	G	S	G	P	T	L	F	A	L
Query Conservation		.																																			.	.	.	.	.	.	.	.	.												.	.	.	.	.
Alig confidence		.																																			.	.	.	.	.	.	.	.	.												.	.	.	.	.
Template Conservation
Template Sequence		P	K	R	F	E	V	X	R	K	A	I	V	E	K	D	F	A	T	F	A	K	E	T	X	X	D	S	N	S	F	H	A	T	C	L	D	S	F	P	P	I	F	Y	X	N	D	T	S	K	R	I	I	S	W	C	H	T	I	N	Q	F	Y	G	E	T	I	V	A	Y	T	F	D	A	G	P	N	A	V	L	Y
Template Known Secondary structure														T	T																						T	S	S	S																								T	S									S	S	S
Template Predicted Secondary structure
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.																																				.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		C	D	K	P	E	T	A	Q	R	V	A	D	W	L	G	K	N	Y	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	N	Q	E	G	F	V	H	I	C	R	L	D	T	A	G	A	R	V	L	E
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Template Conservation				.																																																																.
Template Sequence		Y	L	.	A	E	N	E	S	K	L	F	A	F	I	Y	K	L	F	G	S	V	P	G	W	D	K	K	F	T	T	E	Q	L	E	A	F	N	H	Q	F	E	S	S	N	F	T	A	R	E	L	D	L	E	L	Q	K	D	V	A	R	V	I	L	T	Q	V	.	G	S	G	P	Q	E	T	N
Template Known Secondary structure				.	G	G	G													T	T	S	T	T	S	T	T	T															T	S				S	S				S	S	G	G	G	G									B	.								S
Template Predicted Secondary structure				.																																																																.
Template SS confidence
		311	.		.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.		.	.	.	.	380	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions