Job Description P36554 Confidence 100.00% Date Thu Jan 5 11:53:15 GMT 2012 Rank 2 Aligned Residues 407 % Identity 12% Template c3o7pA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:l-fucose-proton symporter; PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a) Resolution 3.20 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	W	Q	L	W	I	V	A	F	G	F	F	M	Q	S	L	D	T	T	I	V	N	T	A	L	P	S	M	A	Q	S	L	G	E	S	P	L	H	M	H	M	V	I	V	S	Y	V	L	T	V	A	V	M	L	P	A	S	G	W	L	A	D	K	V	G	V	R	N	I	F	F	T	A	I	V	L	F	T	L
Query Conservation
Alig confidence																.	.
Template Conservation																.	.
Template Sequence		R	S	Y	I	I	P	F	A	L	L	C	S	L	F	.	.	F	L	W	A	V	A	N	N	L	N	D	I	L	L	P	Q	F	Q	Q	A	F	F	Q	A	G	L	I	Q	S	A	F	Y	F	G	Y	F	I	I	P	I	P	A	G	I	L	M	K	K	L	S	Y	K	A	G	I	I	T	G	L	F	L	Y	A	L
Template Known Secondary structure			T	T	T											.	.																			T	T			T	T													T	T											S
Template Predicted Secondary structure																.	.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.			.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		88	.	90	.	.	.	.	.				.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure										.	.	.
Query SS confidence										.	.	.
Query Sequence		G	S	L	F	C	A	L	S	.	.	.	G	T	L	N	E	L	L	L	A	R	A	L	Q	G	V	G	G	A	M	M	V	P	V	G	R	L	T	V	M	K	I	V	P	R	E	Q	Y	M	A	A	M	T	F	V	T	L	P	G	Q	V	G	P	L	L	G	P	A	L	G	G	L	L	V	E	Y	A	S	W	H
Query Conservation										.	.	.
Alig confidence										.	.	.
Template Conservation
Template Sequence		G	A	A	L	F	W	P	A	A	E	I	M	N	Y	T	L	F	L	V	G	L	F	I	I	A	A	G	L	G	C	L	E	T	A	A	N	P	F	V	T	V	L	G	P	E	S	S	G	H	F	R	L	N	L	A	Q	T	F	A	S	F	G	A	I	I	A	V	V	F	G	Q	S	L	I	L	S	N	V	P	H
Template Known Secondary structure					T							T	T																														S	S		G	G	G																										T	T	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	I	F	L	I	N	I	P	V	G	I	I	G	A	I	A	T	L	L	L	M	P	N	Y	T	M	Q	T	R	R	F	D	L	S	G	F	L	L	L	A	V	G	M	A	V	L	T	L	A	L	D	G	S	K	G	T	G	L	S	P	L	T	I	A	G	L	V	A	V	G	V	V	A	L	V	L	Y	L	L	H
Query Conservation
Alig confidence																																																																							.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																							.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	S	Q	D	V	L	D	K	M	S	P	E	Q	L	S	A	Y	K	H	S	L	V	L	S	V	Q	T	P	Y	M	I	I	V	A	I	V	L	L	V	A	L	L	I	M	L	T	K	F	P	A	L	Q	S	D	N	H	S	D	A	K	Q	G	S	F	S	A	S	L	S	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										S																	T	T																			S						T	T	T					S	S	T	T	S							.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	N	N	N	R	A	L	F	S	L	K	L	F	R	T	R	T	F	S	L	G	L	A	G	S	F	A	G	R	I	G	S	G	M	L	P	F	M	T	P	V	F	L	Q	I	G	L	G	F	S	P	F	H	A	G	L	M	M	I	P	M	V	L	G	S	M	G	M	K	R	I	V	V	Q	V	V	N	R	F
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	R	L	A	R	I	R	H	W	R	W	A	V	L	A	Q	F	C	Y	V	G	A	Q	T	A	C	W	S	Y	L	I	R	Y	A	V	E	E	I	P	G	M	T	A	G	F	A	A	N	Y	L	T	G	T	M	V	C	F	F	I	G	R	F	T	G	T	W	L	I	S	R	F
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.																																					S	T	T																															S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Template SS confidence
												253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Y	R	R	V	L	V	A	T	T	L	G	L	S	L	V	T	L	L	F	M	T	T	A	L	L	G	W	Y	Y	V	L	P	F	V	L	F	L	Q	G	M	V	N	S	T	R	F	S	S	M	N	T	L	T	L	K	D	L	P	D	N	L	A	S	S	G	N	S	L	L	S	M	I	M	Q	L	S	M	S	I
Query Conservation
Alig confidence																									.	.	.	.																																							.	.
Template Conservation																									.	.	.	.																																							.	.
Template Sequence		A	P	H	K	V	L	A	A	Y	A	L	I	A	M	A	L	C	L	I	S	A	F	A	.	.	.	.	G	G	H	V	G	L	I	A	L	T	L	C	S	A	F	M	S	I	Q	Y	P	T	I	F	S	L	G	I	K	N	L	G	Q	D	T	K	Y	G	.	.	S	S	F	I	V	M	T	I	I	G	G	G	I
Template Known Secondary structure																								S	.	.	.	.																	T	T											S	S		G	G	G					.	.							G	G	G
Template Predicted Secondary structure																									.	.	.	.																																							.	.
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.					.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.			.	.	.	.	.	.	390	.	.	.	.	.	.
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	T	I	A	G	L	L	L	G	L	F	G	S	Q	H	V	S	V	D	S	G	T	T	Q	T	V	F	M	Y	T	W	L	S	M	A	L	I	I	A	L	P	A	F	I	F	A	R	V	P	N	D
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	T	P	V	M	G	F	V	S	D	A	A	G	N	I	P	T	A	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L	I	P	A	L	C	F	A	V	I	F	I	F	A	R	F	R	S	Q	T
Template Known Secondary structure														T	S	S	G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	G															T	S
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.														.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.