Return to main results Retrieve Phyre Job Id

Job DescriptionP58041
Confidence1.85%DateThu Jan 5 12:06:36 GMT 2012
Rank37Aligned Residues10
% Identity20%Templatec2xi1A_
PDB info PDB header:viral proteinChain: A: PDB Molecule:nef; PDBTitle: crystal structure of the hiv-1 nef sequenced from a patient's sample
Resolution3.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   50.........
Predicted Secondary structure 





Query SS confidence 









Query Sequence  LNGIISPSER
Query Conservation 

 

  


Alig confidence 









Template Conservation 



 

 

Template Sequence  LEGLVYSQRE
Template Known Secondary structure  TTT
B

Template Predicted Secondary structure 




Template SS confidence 









   97..100......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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