Job Description P76369 Confidence 95.14% Date Wed Jan 25 15:21:08 GMT 2012 Rank 133 Aligned Residues 197 % Identity 16% Template d1twya_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.65

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.			.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure																																																								.	.
Query SS confidence																																																								.	.
Query Sequence		L	V	I	G	V	D	D	T	F	P	F	S	L	L	A	P	L	I	E	A	F	Y	Q	H	H	S	V	T	R	L	K	F	I	N	G	V	L	G	G	S	W	D	A	L	T	Q	G	R	A	D	I	I	V	G	.	.	A	M	H	E	P	P	S	S	S	E	F	G	F	S	R	L	G	D	L	E	Q	V	F	A
Query Conservation																																																								.	.
Alig confidence												.																																												.	.
Template Conservation												.
Template Sequence		I	T	I	S	G	S	T	S	V	A	.	R	I	X	D	V	L	A	E	K	Y	N	Q	Q	H	P	E	T	Y	V	A	V	Q	G	V	G	S	T	A	G	I	S	L	L	K	K	G	V	A	D	I	A	X	T	S	R	Y	L	T	E	S	E	A	Q	N	T	L	H	T	F	T	L	A	F	D	G	L	A	I	V
Template Known Secondary structure												.															T	T								S											T	T	S		S					S	S				T	T	T			T	T
Template Predicted Secondary structure												.
Template SS confidence
		30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.																			.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.														.	.	.	.	.	220	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	A	P	H	H	P	L	A	L	E	E	E	P	L	N	R	R	I	I	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	Y	R	A	I	V	V	G	D	T	A	Q	A	G	A	S	T	A	S	Q	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	D	E	Q	E	A	I	T
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.
Template Sequence		V	N	Q	A	N	P	V	T	N	L	.	.	.	.	T	R	E	Q	L	Y	G	I	Y	K	G	Q	I	T	N	W	K	Q	V	G	G	N	D	Q	K	I	A	V	V	T	R	E	A	S	S	G	T	R	Y	S	F	E	S	L	X	G	L	T	K	T	V	K	D	R	E	V	S	D	V	A	P	T	A	L	V	V
Template Known Secondary structure				T	T							.	.	.	.											T	S			B	G	G	G	G	T	S		S		B								T	T												T						T	T						S		T	T	S
Template Predicted Secondary structure												.	.	.	.
Template SS confidence
		109	110	.	.	.	.	.	.	.	.					.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.								.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.
Query Sequence		V	F	D	F	K	T	K	L	E	L	Q	I	S	G	L	G	C	G	Y	L	P	R	Y	L	A	Q	R	F	L	D	S	G	A	L	I	E	K	K	V	V	A	Q	T	.	.	.	.	.	.	.	L	F	E	P	V	W	I	G	W	N	E	Q	T	A	G	L	A	S	G	W	W	R	D	E	I	L	A	N	S	A
Query Conservation																																													.	.	.	.	.	.	.
Alig confidence																																													.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	S	N	S	X	X	K	T	L	V	N	H	N	T	Q	A	V	G	F	I	S	I	G	S	V	D	K	S	V	K	A	I	Q	F	E	K	A	D	P	T	S	D	N	I	A	K	H	T	Y	Q	L	S	R	P	F	L	I	L	H	Y	S	D	N	A	D	E	Q	T	K	E	F	I	A	F	L	K	S	E	S	A
Template Known Secondary structure		S	S												T	T							G	G	G			T	T	S						T	T	B									T	T		S												T	T	T														S
Template Predicted Secondary structure
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
		295	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		265	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions