Return to main results Retrieve Phyre Job Id

Job DescriptionP76369
Confidence93.18%DateWed Jan 25 15:21:08 GMT 2012
Rank165Aligned Residues86
% Identity16%Templated1ku9a_
SCOP infoDNA/RNA-binding 3-helical bundle "Winged helix" DNA-binding domain DNA-binding protein Mj223
Resolution2.80

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10........ .20.........30.........40.........50...... ...60... ......
Predicted Secondary structure 


...









.......
...
Query SS confidence 















. . .





































. . . . . . .






. . .





Query Sequence  PLLDVLMILDALEKEG. . . SFAAASAKLYKTPSALSYTVHKLESDLNIQLLDRSGHR. . . . . . . AKFTRTG. . . KMLLEK
Query Conservation    
  
  
  
 
 
...
 
 

  
 


 


  
  

  

  

 
    .......  

  
...  
   
Alig confidence 















...
























...









.......






...





Template Conservation 
      

  
       
  


  
 



 

  
  

 ... 


 
     


      
            
Template Sequence  LNKSVGAVYAILYLSDKPLTISDIXEELKISKGNVSXSLKKLEE. . . LGFVRKVWIKGERKNYYEAVDGFSSIKDIAKRK
Template Known Secondary structure 


SS
T

...TTS

TT
SS


Template Predicted Secondary structure 












...






Template SS confidence 















































































   24.....30.........40.........50.........60....... ..70.........80.........90.........100
 
   70.........80.........90.
Predicted Secondary structure 



Query SS confidence 





















Query Sequence  GREVLHTVRELEKQAIKLHEGW
Query Conservation 
   
                 
Alig confidence 





















Template Conservation            
          
Template Sequence  HDLIAKTYEDLKKLEEKCNEEE
Template Known Secondary structure  S
TTS
Template Predicted Secondary structure 


Template SS confidence 





















   101........110.........120..
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions