Return to main results Retrieve Phyre Job Id

Job DescriptionP76369
Confidence99.68%DateWed Jan 25 15:21:08 GMT 2012
Rank23Aligned Residues204
% Identity11%Templated1al3a_
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution1.80

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   90.........100.........110.........120.........130.........140.........150.........160.........
Predicted Secondary structure 
























































Query SS confidence 















































































Query Sequence  GWENELVIGVDDTFPFSLLAPLIEAFYQHHSVTRLKFINGVLGGSWDALTQGRADIIVGAMHEPPSSSEFGFSRLGDLEQ
Query Conservation                                                                                  
Alig confidence 






























































..














Template Conservation 

 
 



         
   
  
    
 
 
 
       
   
     
        ..               
Template Sequence  PDKGSLYVATTHTQARYALPGVIKGFIERYPRVSLHMHQGSPTQIAEAVSKGNADFAIATEAL. . HLYDDLVMLPCYHWN
Template Known Secondary structure 


TS
T

TT

SSS

..
TTS

Template Predicted Secondary structure 

















..














Template SS confidence 















































































   90.........100.........110.........120.........130.........140.........150.. .......160.......
 
   170.........180.........190.........200...... ...210.........220.........230.........240.....
Predicted Secondary structure 





















....














Query SS confidence 




































. . . .






































Query Sequence  VFAVAPHHPLALEEEPLNRRIIKRYRAIVVGDTAQAG. . . . ASTASQLLDEQEAITVFDFKTKLELQISGLGCGYLPRYL
Query Conservation                       
     
         ....                         
  
 

  

   
Alig confidence 




































....






































Template Conservation                                                                    
  
 

  

   
Template Sequence  RSIVVTPEHPLATKGSVSIEELAQYPLVTYTFGFTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVRLGLGVGVIASMA
Template Known Secondary structure 
TTSTTTTTS


TS
TTSTTT


SSTS
GGG
Template Predicted Secondary structure 










































Template SS confidence 















































































   168.170.........180.........190.........200.........210.........220.........230.........240.......
 
   246...250.........260.........270...... ...280.........290......
Predicted Secondary structure 













.







Query SS confidence 






























.



















Query Sequence  AQRFLDSGALIEKKVVAQTLFEPVWIGWNEQ. TAGLASGWWRDEILANSAIA
Query Conservation           
  
            
     .         
  
    
  
Alig confidence 
.




























.



















Template Conservation   .       
  
            
   
   

     

  
   
   
Template Sequence  V. DPVSDPDLVKLDANGIFSHSTTKIGFRRSTFLRSYMYDFIQRFAPHLTRD
Template Known Secondary structure 
.
TTT
TTS
BTTB

TT




TT

Template Predicted Secondary structure  .


















Template SS confidence 



















































   248 .250.........260.........270.........280.........290........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions