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Job DescriptionP76369
Confidence99.71%DateWed Jan 25 15:21:08 GMT 2012
Rank19Aligned Residues202
% Identity14%Templatec3jv9B_
PDB info PDB header:transcriptionChain: B: PDB Molecule:transcriptional regulator, lysr family; PDBTitle: the structure of a reduced form of oxyr from n. meningitidis
Resolution2.39 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   92.......100.........110.........120.........130.........140.........150.........160.........170.
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Query Sequence  ENELVIGVDDTFPFSLLAPLIEAFYQHHSVTRLKFINGVLGGSWDALTQGRADIIVGAMHEPPSSSEFGFSRLGDLEQVF
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Template Sequence  EGAFKLGLIFTVAPYLLPKLIVSLRRTAPKXPLXLEENYTHTLTESLKRGDVDAIIVAEPF. . QEPGIVTEPLYDEPFFV
Template Known Secondary structure 


TTT
TT


TTSSSSS
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TT
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   90.........100.........110.........120.........130.........140.........150 .........160.......
 
   172.......180.........190.........200.........210.........220.........230.........240.........250.
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Query Sequence  AVAPHHPLALEEEPLNRRIIKRYRAIVVGDTAQAGASTASQLLDEQEAITVFDFKTKLELQISGLGCGYLPRYLAQRFLD
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Template Sequence  IVPKGHSFEELDA. VSPRXLGEEQVLLLTEGNCXRDQVLSSC. . . TNTLQGSSINTIRHXVASGLAISVLPATALTENDH
Template Known Secondary structure  TT
GGGG
SS.

SSGGGGS

TT
TT
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SSTTS
GGG

GGGG
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   168.170.........180 .........190.........200........ .210.........220.........230.........240...
 
   252.......260.........270.........280.........290.........300
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Query Sequence  SGALIEKKVVAQTLFEPVWIGWNEQTAGLASGWWRDEILANSAIAGVYA
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Template Sequence  XL. FSIIPFEGTPPSRRVVLAYRRNFVRPKALSAXKAAIXQSQLHGVSF
Template Known Secondary structure  GT.
SSS

TT


TS

TT
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   256. ..260.........270.........280.........290.........300...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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