Job Description P76369 Confidence 99.64% Date Wed Jan 25 15:21:08 GMT 2012 Rank 26 Aligned Residues 209 % Identity 15% Template c2h9bB_ PDB info PDB header:transcription Chain: B: PDB Molecule:hth-type transcriptional regulator benm; PDBTitle: crystal structure of the effector binding domain of a benm variant2 (benm r156h/t157s) Resolution 1.80 Å

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		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	N	E	L	V	I	G	V	D	D	T	F	P	F	S	L	L	A	P	L	I	E	A	F	Y	Q	H	H	S	V	T	R	L	K	F	I	N	G	V	L	G	G	S	W	D	A	L	T	Q	G	R	A	D	I	I	V	G	A	M	H	E	P	P	S	S	S	E	F	G	F	S	R	L	G	D	L	E	Q	V	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	K	T	I	R	I	G	F	V	G	S	L	L	F	G	L	L	P	R	I	I	H	L	Y	R	Q	A	H	P	N	L	R	I	E	L	Y	E	M	G	T	K	A	Q	T	E	A	L	K	E	G	R	I	D	A	G	F	G	R	L	K	I	S	D	P	A	I	K	H	S	L	L	R	N	E	R	L	M	V	A	V
Template Known Secondary structure											G	G	G	G	G	T	T													T	T																				T	S		S					S	S					T	T
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.							.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.
Query Sequence		A	V	A	P	H	H	P	L	A	L	E	E	E	P	L	N	R	R	I	I	K	R	Y	R	A	I	V	V	G	D	T	A	.	.	.	.	.	.	Q	A	G	A	S	T	A	S	Q	L	L	D	E	Q	E	A	I	T	V	F	D	F	K	T	K	L	E	L	Q	I	S	G	L	G	C	G	Y	L	P	R	Y	L
Query Conservation																																		.	.	.	.	.	.
Alig confidence															.																			.	.	.	.	.	.
Template Conservation															.
Template Sequence		H	A	S	H	P	L	N	Q	M	K	D	K	G	.	V	H	L	N	D	L	I	D	E	K	I	L	L	Y	P	S	S	P	K	P	N	F	S	T	H	V	M	N	I	F	S	D	H	G	L	E	P	T	K	I	N	E	V	R	E	V	Q	L	A	L	G	L	V	A	A	G	E	G	I	S	L	V	P	A	S	T
Template Known Secondary structure			T	T	S	G	G	G	G	G	T	T	T		.	B		G	G	G	S	T	T	S								S	S	S	S	S											T	T	T				S						S											T	T	S		B					G	G	G
Template Predicted Secondary structure															.
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.		.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	R	F	L	D	S	G	A	L	I	E	K	K	V	V	A	Q	T	L	F	E	P	V	W	I	G	W	N	E	Q	T	A	G	L	A	S	G	W	W	R	D	E	I	L	A	N	S	A	I	A	G	V	Y	A	K	S	D
Query Conservation
Alig confidence				.	.
Template Conservation				.	.
Template Sequence		Q	S	.	.	I	Q	L	F	N	L	S	Y	V	P	L	L	D	P	D	A	I	T	P	I	Y	I	A	V	R	N	M	E	E	S	T	Y	I	Y	S	L	Y	E	T	I	R	Q	I	Y	A	Y	E	G	F	T	E	P	P	N
Template Known Secondary structure		G	G	.	.				T	T						B		S	T	T											S	S																					T					T	T
Template Predicted Secondary structure				.	.
Template SS confidence
		248	.			250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions