Phyre 2 alignment of P07000 with c2zshA

Job Description P07000
Confidence 99.74% Date Wed Jan 25 15:20:12 GMT 2012

Rank 187 Aligned Residues 238

% Identity 21% Template c2zshA_

PDB info PDB header:hormone receptor Chain: A: PDB Molecule:probable gibberellin receptor gid1l1; PDBTitle: structural basis of gibberellin(ga3)-induced della2 recognition by the gibberellin receptor

Resolution 1.80 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50																				.	.	.	.	.	.	.	.	.	60	.	.	.	.	.						.	.	.	.	70	.	.	.	.	.	.	.	.	.	80		.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.																.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.																.
Query Sequence	E	A	E	F	T	G	V	D	D	I	P	V	R	F	V	R	F	R	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	H	H	D	R	V	V	V	I	C	P	G	R	I	E	.	.	.	.	.	S	Y	V	K	Y	A	E	L	A	Y	D	L	F	H	L	.	G	F	D	V	L	I
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.																.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.																.
Template Conservation
Template Sequence	S	F	D	V	L	I	D	R	R	I	N	L	L	S	R	V	Y	R	P	A	Y	A	D	Q	E	Q	P	P	S	I	L	D	L	E	K	P	V	D	G	D	I	V	P	V	I	L	F	F	H	G	G	S	F	A	H	S	S	A	N	S	A	I	Y	D	T	L	C	R	R	L	V	G	L	C	K	C	V	V	V	S
Template Known Secondary structure								T	T	T	T											T	T		S	S				T	T	S	T	T					S	S	S										S	T	T	T	S			T	T	B															T	S
Template Predicted Secondary structure
Template SS confidence
	65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.

	87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.								.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.				.
Predicted Secondary structure																																										.	.	.	.	.	.	.																													.	.	.
Query SS confidence																																										.	.	.	.	.	.	.																													.	.	.
Query Sequence	I	D	H	R	G	Q	G	R	S	G	R	L	L	A	D	P	H	L	G	H	V	N	R	F	N	D	Y	V	D	D	L	A	A	F	W	Q	Q	E	V	Q	P	.	.	.	.	.	.	.	G	P	W	R	K	R	Y	I	L	A	H	S	M	G	G	A	I	S	T	L	F	L	Q	R	H	P	G	V	.	.	.	C
Query Conservation																																										.	.	.	.	.	.	.																													.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.																													.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	V	N	Y	R	R	A	P	E	N	P	Y	P	.	.	.	.	.	.	.	.	.	.	.	.	.	C	A	Y	D	D	G	W	I	A	L	N	W	V	N	S	R	S	W	L	K	S	K	K	D	S	K	V	H	I	F	L	A	G	D	S	S	G	G	N	I	A	H	N	V	A	L	R	A	G	E	S	G	I	D	V
Template Known Secondary structure						T	T	T	S		T	T	.	.	.	.	.	.	.	.	.	.	.	.	.															T		G	G	G			T	T	T	S	S									T															T	T	T
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	145	.	.	.	.	150	.	.	.	.	.	.														.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.

	157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	D	A	I	A	L	T	A	P	M	F	G	I	V	I	R	M	P	S	F	M	A	R	Q	I	L	N	W	A	E	A	H	P	R	F	R	D	G	Y	A	I	G	T	G	R	W	R	A	L	P	F	A	I	N	V	L	T	H	S	R	Q	R	Y	R	R	N	L	R	F	Y	A	D	D	P	T	I	R	V	G	G	P
Query Conservation
Alig confidence																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	L	G	N	I	L	L	N	P	M	F	G	G	N	E	R	T	E	S	E	K	S	L	D	G	K	Y	F	V	T	V	R	D	R	D	W	Y	W	K	A	F	L	P	E	G	E	D	R	E	H	P	A	C	N	P	F	S	P	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							S						S	S									T	T	T	S	S														S		T	T			T	T	S	T	T	T		T	T	S	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.

	237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260					.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.		.	.	.	.	310	.
Predicted Secondary structure																									.	.	.	.																																														.
Query SS confidence																									.	.	.	.																																														.
Query Sequence	T	Y	H	W	V	R	E	S	I	L	A	G	E	Q	V	L	A	G	A	G	D	D	A	T	.	.	.	.	P	T	L	L	L	Q	A	E	E	E	R	V	V	D	N	R	M	H	D	R	F	C	E	L	R	T	A	A	G	H	P	V	E	G	G	R	P	L	V	I	K	G	A	Y	H	.	E	I	L	F	E	K
Query Conservation																									.	.	.	.																																														.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.															.	.															.	.	.													.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.															.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	K	S	L	E	G	V	S	F	P	K	S	L	V	V	V	A	G	L	D	L	I	R	D	.	.	W	Q	L	A	Y	A	E	G	L	K	K	A	G	Q	.	.	.	E	V	K	L	M	H	L	E	K	A	T	V	G	F	Y	L	L	P	N
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S				T	T												T	T	S	T	T			.	.												T	T		.	.	.								T	T			T	T	T	T	S	S	S
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.															.	.	.
Template SS confidence
																			270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.			.	.	.	.	.	.	300	.	.	.	.	.	.	.				.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.

	312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	D	A	M	R	S	V	A	L	H	A	I	V	D	F	F	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence	N	N	H	F	H	N	V	M	D	E	I	S	A	F	V	N
Template Known Secondary structure	S
Template Predicted Secondary structure
Template SS confidence
	327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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