Job Description P07000 Confidence 99.96% Date Wed Jan 25 15:20:12 GMT 2012 Rank 80 Aligned Residues 264 % Identity 13% Template c1wprA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:sigma factor sigb regulation protein rsbq; PDBTitle: crystal structure of rsbq inhibited by pmsf Resolution 2.60 Å

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		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	D	D	I	P	V	R	F	V	R	F	R	A	Q	H	H	D	R	V	V	V	I	C	P	G	R	I	E	S	Y	V	K	Y	A	E	L	A	Y	D	L	F	H	L	G	F	D	V	L	I	I	D	H	R	G	Q	G	R	S	G	R	L	L	A	D	P	H	L	G	H	V	N	R	F	N	D	Y	V	D	D
Query Conservation
Alig confidence																	.	.																											.																					.	.	.	.	.	.	.	.
Template Conservation																	.	.																											.																					.	.	.	.	.	.	.	.
Template Sequence		T	S	I	L	S	R	N	H	V	K	V	K	G	S	G	.	.	K	A	S	I	M	F	A	P	G	F	G	C	D	Q	S	V	W	N	A	V	A	P	A	F	E	E	.	D	H	R	V	I	L	F	D	Y	V	G	S	G	H	S	D	L	Y	D	L	.	.	.	.	.	.	.	.	N	R	Y	Q	T	L	D	G
Template Known Secondary structure								T	T								.	.	S	S								T	T			G	G	G	G	T	T	T	G	G	G	G	T	T	.	T	S								T	T	T	S	S	S					T	.	.	.	.	.	.	.	.	G	G	G	S	S
Template Predicted Secondary structure																	.	.																											.																					.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.			.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.									.	.	.	.	.	.	70	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	A	F	W	Q	Q	E	V	Q	P	G	P	W	R	K	R	Y	I	L	A	H	S	M	G	G	A	I	S	T	L	F	L	Q	R	H	P	G	V	C	D	A	I	A	L	T	A	P	M	F	G	I	V	I	R	M	P	S	F	M	A	R	Q	I	L	N	W	A	E	A	H	P	R	F	R	D	G	Y	A	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	A	Q	D	V	L	D	V	C	E	A	L	D	L	K	E	T	V	F	V	G	H	S	V	G	A	L	I	G	M	L	A	S	I	R	R	P	E	L	F	S	H	L	V	M	V	G	P	S	P	C	Y	L	N	D	P	P	E	Y	Y	G	G	F	E	E	E	Q	L	L	G	L	L	E	M	M	E	K	N	Y	I
Template Known Secondary structure													T	T		S								T														G	G	G								S			S	B		B			T	T	T				S	B															T
Template Predicted Secondary structure
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	G	R	W	R	A	L	P	F	A	I	N	V	L	T	H	S	R	Q	R	Y	R	R	N	L	R	F	Y	A	D	D	P	T	I	R	V	G	G	P	T	Y	H	W	V	R	E	S	I	L	A	G	E	Q	V	L	A	G	A	G	D	D	A	T	P	T	L	L	L	Q	A	E	E	E	R	V	V	D	N	R
Query Conservation
Alig confidence																																					.	.	.	.	.	.	.	.
Template Conservation																																					.	.	.	.	.	.	.	.
Template Sequence		G	W	A	T	V	F	A	A	T	V	L	N	Q	P	D	R	P	E	I	K	E	E	L	E	S	R	F	C	S	T	D	P	V	I	A	.	.	.	.	.	.	.	.	R	Q	F	A	K	A	A	F	F	S	D	H	R	E	D	L	S	K	V	T	V	P	S	L	I	L	Q	C	A	D	D	I	I	A	P	A	T
Template Known Secondary structure															T	T														T	S						.	.	.	.	.	.	.	.									T		B						T	T			S									S		S	S	S
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.									.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	H	D	R	F	C	E	L	R	T	A	A	G	H	P	V	E	G	G	R	P	L	V	I	K	G	A	Y	H	E	I	L	F	E	K	D	A	M	R	S	V	A	L	H	A	I	V	D	F	F	N	R	H
Query Conservation
Alig confidence										.	.	.	.	.	.	.																						.	.	.
Template Conservation										.	.	.	.	.	.	.																						.	.	.
Template Sequence		V	G	K	Y	M	H	Q	H	.	.	.	.	.	.	.	L	P	Y	S	S	L	K	Q	M	E	A	R	G	H	C	P	H	M	S	H	P	.	.	.	D	E	T	I	Q	L	I	G	D	Y	L	K	A	H
Template Known Secondary structure										.	.	.	.	.	.	.	S	S	S										S	S								.	.	.														T
Template Predicted Secondary structure										.	.	.	.	.	.	.																						.	.	.
Template SS confidence
		226	.	.	.	230	.	.	.								.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.				.	.	.	.	.	260	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions