 |
Job Description | P0CF13 | Confidence | 87.87% | Date | Thu Jan 5 11:30:46 GMT 2012 |
Rank | 193 | Aligned Residues | 39 |
% Identity | 13% | Template | c1pqvS_ |
PDB info |
PDB header:transferase/transcription | Chain: S: PDB Molecule:transcription elongation factor s-ii; |
PDBTitle: rna polymerase ii-tfiis complex
|
Resolution | 3.80 Å |
|
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | |
|
|
|
. | . | . | 30 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
| . | . | . | . |
|
|
|  |  |  |
|
|
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | A | S | V | S | I | S | C | P | S | C | S | A | T | D | G | V | V | R | N | G | K | S | T | A | G | . |
. |
. |
. |
H | Q | R | Y | L | C | S | H | C | R | K | T | W |
Query Conservation |   |
|   |   |   |   |   |   |
|
|   |
|
|   |   |   |   |
|   |
|   |
|   |   |   |   |
| . | . | . | . |   |
|
|
|   |
|
|   |
|   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |
|   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|
|   |   |
|   |
|   |   |
|   |   |
|
|   |   |
|
Template Sequence |   |
S | V | T | D | R | F | T | C | G | K | C | K | E | K | K | V | S | Y | Y | Q | L | Q | T | R | S | A | D | E | P | L | T | T | F | C | T | C | E | A | C | G | N | R | W |
Template Known Secondary structure |   |
|
|
| T | T |
|
|
| S | S | S |
| S | S |
|  |  |  |  |
|
|
|
| S |
| S | S | S |
|
|
|
|  |  |  |  | T | T | T |
|
|  |  |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
264 | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|