Job Description P17993 Confidence 98.01% Date Thu Jan 5 11:36:26 GMT 2012 Rank 290 Aligned Residues 131 % Identity 17% Template c3lkzB_ PDB info PDB header:viral protein Chain: B: PDB Molecule:non-structural protein 5; PDBTitle: structural and functional analyses of a conserved hydrophobic pocket2 of flavivirus methyltransferase Resolution 2.00 Å

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		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.			.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure																																			.	.
Query SS confidence																																			.	.
Query Sequence		L	R	L	G	Y	I	A	E	R	A	G	G	L	F	G	K	K	V	L	D	V	G	C	G	G	G	I	L	A	E	S	M	A	.	.	R	E	G	A	T	V	T	G	L	D	M	G	F	E	P	L	Q	V	A	K	L	H	A	L	E	S	G	I	Q	V	D	Y	V	Q	E	T	V	E	E	H	A	A	K	H	A
Query Conservation																																			.	.
Alig confidence																																			.	.																						.	.
Template Conservation																																																										.	.
Template Sequence		A	K	L	R	W	L	V	E	R	R	F	L	E	P	V	G	K	V	I	D	L	G	C	G	R	G	G	W	C	Y	Y	M	A	T	Q	K	R	V	Q	E	V	R	G	Y	T	K	G	G	P	G	H	E	E	P	Q	L	.	.	V	Q	S	Y	G	W	N	I	V	T	M	K	S	G	V	D	V	F	Y	R	P	S
Template Known Secondary structure										T	T	S											T		T	T								T	T		T	T											S	T	T	S						.	.			B	T	T	G	G	G						S			T	T	S	S
Template Predicted Secondary structure																																																										.	.
Template SS confidence
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.			.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.											.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.		.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.																	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.																	.
Query Sequence		G	Q	Y	D	V	V	T	C	M	E	M	L	E	H	V	P	.	.	.	.	.	.	.	.	.	.	D	P	Q	S	V	V	R	A	C	A	Q	L	V	K	P	G	.	G	D	V	F	F	S	T	L	N	R	N	G	K	S	W	L	M	A	V	V	G	A	E	Y	I	L	R
Query Conservation																		.	.	.	.	.	.	.	.	.	.																	.
Alig confidence													.	.	.	.		.	.	.	.	.	.	.	.	.	.																	.
Template Conservation													.	.	.	.
Template Sequence		E	C	C	D	T	L	L	C	D	I	G	.	.	.	.	E	S	S	S	S	A	E	V	E	E	H	R	T	I	R	V	L	E	M	V	E	D	W	L	H	R	G	P	R	E	F	C	V	K	V	L	C	P	Y	M	P	K	V	I	E	K	M	E	L	L	Q	R	R	Y	G
Template Known Secondary structure					S								.	.	.	.				S																					T	T										S		T	T	S
Template Predicted Secondary structure													.	.	.	.
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.					.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions