Job Description P17993 Confidence 98.66% Date Thu Jan 5 11:36:26 GMT 2012 Rank 262 Aligned Residues 120 % Identity 20% Template c2q41D_ PDB info PDB header:transferase Chain: D: PDB Molecule:spermidine synthase 1; PDBTitle: ensemble refinement of the protein crystal structure of spermidine2 synthase from arabidopsis thaliana gene at1g23820 Resolution 2.70 Å

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		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.			80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.						.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.		.	.	.	.	.	.
Predicted Secondary structure																										.	.																								.	.	.	.	.																				.
Query SS confidence																										.	.																								.	.	.	.	.																				.
Query Sequence		F	G	K	K	V	L	D	V	G	C	G	G	G	I	L	A	E	S	M	A	R	E	G	A	.	.	T	V	T	G	L	D	M	G	F	E	P	L	Q	V	A	K	L	H	A	L	E	S	G	.	.	.	.	.	I	Q	V	D	Y	V	Q	E	T	V	E	E	H	A	A	K	H	A	G	.	Q	Y	D	V	V	T
Query Conservation																										.	.																								.	.	.	.	.																				.
Alig confidence																										.	.																								.	.	.	.	.																				.
Template Conservation
Template Sequence		N	P	K	K	V	L	V	I	G	G	G	D	G	G	V	L	R	E	V	A	R	H	A	S	I	E	Q	I	D	X	C	E	I	D	K	X	V	V	D	V	S	K	Q	F	F	P	D	V	A	I	G	Y	E	D	P	R	V	N	L	V	I	G	D	G	V	A	F	L	K	N	A	A	E	G	S	Y	D	A	V	I
Template Known Secondary structure		S								S		S	S	S							T	T		T	T																						T	T	T	G	G	G	T	T		T	T						S								S	S		S	S
Template Predicted Secondary structure
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
				128	.	130	.	.	.	.	.	.	.	.			.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure		.	.												.	.
Query SS confidence		.	.												.	.
Query Sequence		.	.	C	M	E	M	L	E	H	V	P	D	P	.	.	Q	S	V	V	R	A	C	A	Q	L	V	K	P	G	G	D	V	F	F	S	T	L	N	R	N	G	K	S	W	L	M	A	V	V	G	A	E
Query Conservation		.	.												.	.
Alig confidence		.	.												.	.
Template Conservation
Template Sequence		V	D	S	S	D	P	I	G	P	A	K	E	L	F	E	K	P	F	F	Q	S	V	A	R	A	L	R	P	G	G	V	V	C	T	Q	A	E	S	L	W	L	H	X	D	I	I	E	D	I	V	S	N
Template Known Secondary structure							S	S	S	G	G	G	G	G	G	S																								T	T	T
Template Predicted Secondary structure
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions