Job Description P45563 Confidence 83.59% Date Thu Jan 5 12:03:16 GMT 2012 Rank 42 Aligned Residues 168 % Identity 9% Template c2vdcF_ PDB info PDB header:oxidoreductase Chain: F: PDB Molecule:glutamate synthase [nadph] large chain; PDBTitle: the 9.5 a resolution structure of glutamate synthase from2 cryo-electron microscopy and its oligomerization behavior3 in solution: functional implications. Resolution 9.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.								.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.
Query Sequence		R	G	M	T	I	M	T	D	A	I	R	T	F	K	L	L	G	C	E	L	L	F	C	T	N	A	A	G	S	L	R	P	E	V	.	.	.	.	.	.	.	G	A	G	S	L	V	A	L	K	D	H	I	N	T	M	P	G	T	P	M	V	G	L	N	D	D	R	F	G	E	R	F	F	S	L	A	N	A	Y
Query Conservation																																				.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.	.	.
Template Sequence		Y	S	I	E	D	L	A	Q	L	I	Y	D	L	K	Q	I	N	P	D	A	K	V	T	V	K	L	V	S	R	S	G	I	G	T	I	A	A	G	V	A	K	A	N	A	D	I	I	L	I	S	G	N	S	G	G	T	G	A	S	P	Q	.	.	.	.	.	.	.	.	.	T	S	I	K	F	A	G	L	P	W
Template Known Secondary structure		S	S																T	T											T	T											T	T		S							T	T				S	S				.	.	.	.	.	.	.	.	.						S
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.
Template SS confidence
		975	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.										.	.	.	.	1040	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.					.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure																																																													.	.	.	.
Query SS confidence																																																													.	.	.	.
Query Sequence		D	A	E	Y	R	A	L	L	Q	K	V	A	K	E	E	G	F	P	L	T	E	G	V	F	V	S	Y	P	G	P	N	F	E	T	A	A	E	I	R	M	M	Q	I	I	G	G	D	V	V	G	M	S	V	V	P	E	V	I	S	.	.	.	.	A	R	H	C	D	L	K	V	V	A	V	S	A	I	T	N	M
Query Conservation																																																													.	.	.	.
Alig confidence								.														.	.								.																														.	.	.	.
Template Conservation								.														.	.								.
Template Sequence		E	M	G	L	S	E	.	V	H	Q	V	L	T	L	N	R	L	R	H	R	.	.	V	R	L	R	T	D	G	.	G	L	K	T	G	R	D	I	V	I	A	A	M	L	G	A	E	E	F	G	I	G	T	A	S	L	I	A	M	G	C	I	M	V	R	Q	C	H	S	N	T	C	P	V	G	V	C	V	Q	D
Template Known Secondary structure								.								T	T		T	T	T	.	.	S						S	.	S			S										T	T		S												T	T							G	G	G	T			T	T	S	S	S
Template Predicted Secondary structure								.														.	.								.
Template SS confidence
		1046	.	.	.	1050	.		.	.	.	.	.	.	.	.	1060	.	.	.	.			.	.	.	.	.	1070	.		.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	G	L	S	D	V	K	L	S	H	A	Q	T	L	A	A	A	E	L	S	K	Q	N	F	I	N	L	I	C	G	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	K	L	R	Q	K	F	V	G	T	P	E	K	V	V	N	L	F	T	F	L	A	E	E	V	R	E	I	L	A	G	L
Template Known Secondary structure						T	T
Template Predicted Secondary structure
Template SS confidence
		1122	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions