Return to main results Retrieve Phyre Job Id

Job DescriptionP77329
Confidence100.00%DateThu Jan 5 12:27:48 GMT 2012
Rank6Aligned Residues345
% Identity23%Templated1e3db_
SCOP infoHydB/Nqo4-like HydB/Nqo4-like Nickel-iron hydrogenase, large subunit
Resolution1.8

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   175....180.........190.........200.........210.........220.........230.........240.........250....
Predicted Secondary structure 































Query SS confidence 















































































Query Sequence  NEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAY
Query Conservation           
  

 

   

    
   

 
   
   

 


 






     
  

 





  

  
 
Alig confidence 














.























.















.





















Template Conservation           
 


 .





  
 
 



 
  
   .
   



 

 

  . 

  
  





  

  
 
Template Sequence  TPRSNYTGPIVVDPL. TRIEGHLRIEVEVEGGVIKEARSC. ATLFRGIETILKGRDP. RDAQHFTQRTCGVCTYTHALAS
Template Known Secondary structure 






SS
.
SSBS
TT.




TTS
G.GGTT
STTTT
Template Predicted Secondary structure 








.






.




.




Template SS confidence 















































































   6...10.........20 .........30.........40.... .....50.........60 .........70.........80..
 
   255....260.........270.........280.........290....
Predicted Secondary structure 




........................................
Query SS confidence 







































. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  TNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSC. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation    


 
 




  
  

 

 




 



 
  

........................................
Alig confidence 







































........................................
Template Conservation    


 
 

 

  
  

 

   
 
 

 
    
  

                                     
Template Sequence  TRCLEDAINKPIPANATYIRNLVLGNQFMHDHLVHFYHLHALDFVDVTSALLADPAKAAKLANSISPRKATTEEFAAVQA
Template Known Secondary structure 




TTGGGT

TTGGGGS

SS


Template Predicted Secondary structure 




























Template SS confidence 















































































   83......90.........100.........110.........120.........130.........140.........150.........160..
 
   295....300.........310.........320.........330....... ..340.
Predicted Secondary structure  ...............................














..


Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .










































. .



Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . HFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRR. . DILK
Query Conservation  ...............................   
       
   

    
 
 
 
 
 
     



  ..

  
Alig confidence  ...............................










































..



Template Conservation                                                
     
    

   
     



        
Template Sequence  KLKTFVASGQLGPFTNAYFLGGHEGYYMDPEANLVCTAHYLQALRAQVEVAKGMAVFGAKNPHTQFTVAGGVTCYEALTP
Template Known Secondary structure  TS

GGGTT
TTTT

TT



S
SSS


TT

GGGGS
Template Predicted Secondary structure 







































Template SS confidence 















































































   163......170.........180.........190.........200.........210.........220.........230.........240..
 
   342.......350.........360...... ...370.........380...
Predicted Secondary structure  .............................










.........
Query SS confidence 
























. . . . . . . . . . . . . . . . . . . . . . . . . . . . .
















. . . . . . . . .
Query Sequence  EQRLQTLKLVREMRADVSELVEMLL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . ATPNMEQRTQGIGILDR. . . . . . . . .
Query Conservation       
   
        
      .............................       
    


  .........
Alig confidence 
























.............................
















.........
Template Conservation           
                                  
  
                  
             
Template Sequence  ERIKQFRELYVKARAFIEEVYIPDLLLVASYYKDWGKIGGTNNFMAFGEFPAPGGERDLNSRWYKPGVIYDRKVGSVQPF
Template Known Secondary structure  T
GGGGGSS

S



TT
TT
GGGSS
TT
GGG
B

Template Predicted Secondary structure 




































Template SS confidence 















































































   243......250.........260.........270.........280.........290.........300.........310.........320..
 
   384.....390.........400.
Predicted Secondary structure  ..............................................................









Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

















Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . QIARDLRFDHPYADYGNI
Query Conservation  ..............................................................  
 
 
   

  
  
Alig confidence  ..............................................................

















Template Conservation 
   
 
 
  
 
      
    
 
          

  
 


 
   






  
      
           
Template Sequence  DPSKIEEHVRHSWYEGKARAPFEGETNPHFTFMGDTDKYSWNKAPRYDGHAVETGPLAQMLVAYGHNHKTIKPTIDAVLG
Template Known Secondary structure 
GGG
TTBTB
S

B
GGG



B



TT
SSS
BSS
TTB

B
STT
TT
Template Predicted Secondary structure 














































Template SS confidence 















































































   323......330.........340.........350.........360.........370.........380.........390.........400..
 
   402.......410.........420.........430.........440 .........450.........460.........470.......
Predicted Secondary structure 







....




















Query SS confidence 






































. . . .




































Query Sequence  PKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPD. . . . TPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQ
Query Conservation           

  

  

  

  

 

 
 
  
  ....
          
 


 
 





 
 
 
  
  
Alig confidence 






































....
































.


Template Conservation           
    
  

  
       
   
  
                   
 


 





 
 
   
.  
Template Sequence  KLNLGPEALFSTLGRTAARGIQTLVIAQQMENWLNEYENNIVKDKQIVEDYAVPTSARGVGFADVSRGGLSHWMTI. EDG
Template Known Secondary structure  T

GGGGSSTTT



B





SSTT.TT
Template Predicted Secondary structure 





























.

Template SS confidence 















































































   403......410.........420.........430.........440.........450.........460.........470........ .480.
 
   478.480.........490.. .......500...... ...510.........520...
Predicted Secondary structure 





.........





......








Query SS confidence 














. . . . . . . . .













. . . . . .
















Query Sequence  KLFRWRCRAATYANW. . . . . . . . . PVLRYMLRGNTVSD. . . . . . APLIIGSLDPCYSCTDR
Query Conservation   
 
  

 

  
 .........  

  
 
  


......   

 




 

 

Alig confidence 














.........













......
















Template Conservation   
  
 

 

  
  
       
  
 

 
  
 
      
  



 


 




Template Sequence  KIDNFQLVVPTTWNLGPRDDKGVPSAAEAALVGTPVADPKRPVEILRTIHSFDPCIACSTH
Template Known Secondary structure 
T



TT



TT
B
S
TTS
T

B
Template Predicted Secondary structure 
































Template SS confidence 




























































   482.......490.........500.........510.........520.........530.........540..
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions