Job Description P05523 Confidence 100.00% Date Wed Jan 25 15:20:11 GMT 2012 Rank 6 Aligned Residues 260 % Identity 27% Template c3a46B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:formamidopyrimidine-dna glycosylase; PDBTitle: crystal structure of mvnei1/thf complex Resolution 2.20 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.				.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.								.	.	.	70	.
Predicted Secondary structure																																												.	.	.																								.	.	.	.	.	.	.
Query SS confidence																																												.	.	.																								.	.	.	.	.	.	.
Query Sequence		P	E	L	P	E	V	E	T	S	R	R	G	I	E	P	H	L	V	G	A	T	I	L	H	A	V	V	R	N	G	R	L	R	W	P	V	S	E	E	I	Y	R	.	.	.	L	S	D	Q	P	V	L	S	V	Q	R	R	A	K	Y	L	L	L	E	L	P	E	G	.	.	.	.	.	.	.	W	I	I	I	H
Query Conservation																																												.	.	.																								.	.	.	.	.	.	.
Alig confidence																																												.	.	.																								.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	E	G	P	E	V	A	L	T	A	D	I	L	E	K	Y	F	K	G	K	T	L	E	Y	I	D	F	I	S	G	R	Y	S	K	S	E	P	E	G	Y	D	D	F	I	A	N	L	P	L	K	V	S	N	V	D	T	K	G	K	F	L	W	F	E	L	F	D	P	N	D	K	S	N	K	W	Y	I	W	N	T
Template Known Secondary structure																			T	T										S	S	G	G	G	T	S			B	T							T		S										T	T									T	T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.		.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure																																																						.
Query SS confidence																																																						.
Query Sequence		L	G	M	S	G	S	L	R	I	L	P	E	E	L	P	P	E	K	H	D	H	V	D	L	V	M	S	N	G	K	V	L	R	Y	T	D	P	R	R	F	G	A	W	L	W	T	K	E	L	E	G	H	.	N	V	L	T	H	L	G	P	E	P	L	S	D	D	F	N	G	E	Y	L	H	Q	K	C	A	K	K
Query Conservation																																																						.
Alig confidence														.	.	.	.	.																																				.																	.	.	.
Template Conservation														.	.	.	.	.																																																					.	.	.
Template Sequence		F	G	L	T	G	M	W	S	L	F	E	A	.	.	.	.	.	K	Y	T	R	A	V	L	S	F	D	N	E	L	M	A	Y	F	S	D	M	R	N	F	G	T	F	K	F	S	N	S	E	K	E	L	K	R	K	L	N	E	L	G	P	D	F	L	K	N	D	D	I	.	.	.	D	I	S	K	I	K	K	Y
Template Known Secondary structure			T	T	T					S	S			.	.	.	.	.	T	T								G	G	G								T	T																			T	T	S			B	T	T	T		S			.	.	.		G	G	G	G	G	G
Template Predicted Secondary structure														.	.	.	.	.																																																					.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.						.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.				.	.	.	.	150	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.		.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure																.																																																														.	.	.	.
Query SS confidence																.																																																														.	.	.	.
Query Sequence		K	T	A	I	K	P	W	L	M	D	N	K	L	V	.	V	G	V	G	N	I	Y	A	S	E	S	L	F	A	A	G	I	H	P	D	R	L	A	S	S	L	S	L	A	E	C	E	L	L	A	R	V	I	K	A	V	L	L	R	S	I	E	Q	G	G	T	T	L	K	D	F	L	Q	S	D	G	.	.	.	.
Query Conservation																.																																																														.	.	.	.
Alig confidence																.																																																														.	.	.	.
Template Conservation
Template Sequence		K	Q	P	I	V	A	L	L	M	D	Q	K	K	I	G	S	G	L	G	N	Y	L	V	A	E	I	L	Y	R	A	K	I	D	P	H	K	L	G	S	N	L	T	D	Q	E	I	E	N	L	W	Y	W	I	K	Y	E	T	K	L	A	Y	D	S	N	H	I	G	Y	M	V	N	L	E	N	E	S	S	K	I	G
Template Known Secondary structure			S	B								T	T	T	T		B														T	T			T	T		B	G	G	G																								S		S	S	S		G	G	G							S
Template Predicted Secondary structure
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
										226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.			.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																						.	.
Query SS confidence		.	.	.	.	.	.	.	.																						.	.
Query Sequence		.	.	.	.	.	.	.	.	K	P	G	Y	F	A	Q	E	L	Q	V	Y	G	R	K	G	E	P	C	R	V	.	.	C	G	T	P	I	V	A	T	K	H	A	Q	R	A	T	F	Y	C	R	Q	C	Q	K
Query Conservation		.	.	.	.	.	.	.	.																						.	.
Alig confidence		.	.	.	.	.	.	.	.																						.	.
Template Conservation
Template Sequence		R	K	N	Y	H	P	N	I	H	P	T	E	K	E	F	D	F	L	V	Y	R	K	K	K	D	P	N	G	N	K	V	I	A	D	K	I	I	G	S	G	K	N	K	R	T	T	Y	W	A	P	A	I	Q	K
Template Known Secondary structure						S	T	T				S	S	S	S				S	S	T	T		S	B		T	T	S		B							S			T	T									T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions