Job Description P05523 Confidence 57.88% Date Wed Jan 25 15:20:11 GMT 2012 Rank 56 Aligned Residues 98 % Identity 16% Template c2q2eB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:type 2 dna topoisomerase 6 subunit b; PDBTitle: crystal structure of the topoisomerase vi holoenzyme from2 methanosarcina mazei Resolution 4.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	N	G	K	V	L	R	Y	T	D	P	R	R	F	G	A	W	L	W	T	K	E	L	E	G	H	N	V	L	T	H	L	G	P	E	P	L	S	D	D	F	N	G	E	Y	L	H	Q	K	C	A	K	K	K	T	A	I	K	P	W	L	M	D	N	K	L	V	V	G	V	G	N	I	Y	A	S	E	S	L	F
Query Conservation
Alig confidence																																							.	.																											.	.	.	.	.	.	.	.
Template Conservation																																							.	.																											.	.	.	.	.	.	.	.
Template Sequence		N	P	H	A	R	I	T	L	I	D	P	D	G	N	E	E	V	F	E	R	A	T	D	K	M	P	E	P	A	E	E	I	L	P	H	P	E	.	.	G	I	E	L	G	T	L	M	K	M	L	H	Y	T	E	P	F	L	R	Y	S	F	C	K	L	L	.	.	.	.	.	.	.	.	T	A	E	E	I	C	K
Template Known Secondary structure				S								T	T	S																							S	T	.	.	T																T	T	S	S	S	S					.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																							.	.																											.	.	.	.	.	.	.	.
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.			240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.									.	.	.	.	270	.	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	G	I	H	P	D	R	L	A	S	S	L	S	L	A	E	C	E	L	L	A	R	V	I	K	A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	A	G	L	D	P	E	I	D	P	H	A	L	G	R	H	E	A	R	K	L	I	E	A	F	E	K	V
Template Known Secondary structure		T	T	T			T	T	S		S	S	S			S	S	S	S	T	T	T	T					T	S
Template Predicted Secondary structure
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions