Job Description P05523 Confidence 100.00% Date Wed Jan 25 15:20:11 GMT 2012 Rank 5 Aligned Residues 247 % Identity 24% Template c2opfA_ PDB info PDB header:hydrolase/dna Chain: A: PDB Molecule:endonuclease viii; PDBTitle: crystal structure of the dna repair enzyme endonuclease-viii (nei)2 from e. coli (r252a) in complex with ap-site containing dna substrate Resolution 1.85 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																																																			.
Query SS confidence																																																																			.
Query Sequence		P	E	L	P	E	V	E	T	S	R	R	G	I	E	P	H	L	V	G	A	T	I	L	H	A	V	V	R	N	G	R	L	R	W	P	V	S	E	E	I	Y	R	L	S	D	Q	P	V	L	S	V	Q	R	R	A	K	Y	L	L	L	E	L	P	E	G	.	W	I	I	I	H	L	G	M	S	G	S	L	R	I
Query Conservation																																																																			.
Alig confidence																																				.	.	.	.																												.
Template Conservation																																				.	.	.	.
Template Sequence		P	E	G	P	E	I	R	R	A	A	D	N	L	E	A	A	I	K	G	K	P	L	T	D	V	W	F	A	F	P	Q	L	K	T	.	.	.	.	Y	Q	S	Q	L	I	G	Q	H	V	T	H	V	E	T	R	G	K	A	L	L	T	H	F	S	N	D	L	T	L	Y	S	H	N	Q	L	Y	G	V	W	R	V
Template Known Secondary structure																			B	T		B							S	S	G	G	G	T	T	.	.	.	.						T	T		B								T	T							T	T	S								T	T	T
Template Predicted Secondary structure																																				.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.					.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.			.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.			.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.				.	.	150	.	.	.
Predicted Secondary structure													.	.																												.	.																														.	.	.
Query SS confidence													.	.																												.	.																														.	.	.
Query Sequence		L	P	E	E	L	P	P	E	K	H	D	.	.	H	V	D	L	V	M	S	N	G	K	V	L	R	Y	T	D	P	R	R	F	G	A	W	L	W	T	K	.	.	E	L	E	G	H	N	V	L	T	H	L	G	P	E	P	L	S	D	D	F	N	G	E	Y	L	H	Q	K	C	.	.	.	A	K	K	K	T	A
Query Conservation													.	.																												.	.																														.	.	.
Alig confidence													.	.																.	.	.	.									.	.																														.	.	.
Template Conservation																														.	.	.	.
Template Sequence		V	D	T	G	E	E	P	Q	T	T	R	V	L	R	V	K	L	Q	T	A	D	K	T	I	L	L	Y	S	.	.	.	.	A	S	D	I	E	M	L	R	P	E	Q	L	T	T	H	P	F	L	Q	R	V	G	P	D	V	L	D	P	N	L	T	P	E	V	V	K	E	R	L	L	S	P	R	F	R	N	R	Q
Template Known Secondary structure				T	T							S									S	S							S	.	.	.	.														T										B	T	T		T	T												S	T	T	T	T	T	S	B
Template Predicted Secondary structure																														.	.	.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.					.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	K	P	W	L	M	D	N	K	L	V	V	G	V	G	N	I	Y	A	S	E	S	L	F	A	A	G	I	H	P	D	R	L	A	S	S	L	S	L	A	E	C	E	L	L	A	R	V	I	K	A	V	L	L	R	S	I	E	Q	G	G	T	T	L	K	D	F	L	Q	S	D	G	K	P	G	Y	F	A	Q	E
Query Conservation
Alig confidence																																																																					.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	A	G	L	L	L	D	Q	A	F	L	A	G	L	G	N	Y	L	R	V	E	I	L	W	Q	V	G	L	T	G	N	H	K	A	K	D	L	N	A	A	Q	L	D	A	L	A	H	A	L	L	E	I	P	R	F	S	Y	A	T	R	G	Q	V	D	A	L	F	.	.	.	.	.	.	.	.	.	.	.	.	R
Template Known Secondary structure						T	T		T	T	T	S	B	T													T	T			T	T		B	G	G	G	S																							T	T	T						.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.													220
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	V	Y	G	R	K	G	E	P	C	R	V	C	G	T	P	I	V	A	T	K	H	A	Q	R	A	T	F	Y	C	R	Q	C	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	K	V	F	H	R	D	G	E	P	C	E	R	C	G	S	I	I	E	K	T	T	L	S	S	A	P	F	Y	W	C	P	G	C	Q
Template Known Secondary structure			S	S	T	T		T	T	S	B		T	T	T			B							T	T							T	T	T
Template Predicted Secondary structure
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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