Job Description P05523 Confidence 100.00% Date Wed Jan 25 15:20:11 GMT 2012 Rank 7 Aligned Residues 244 % Identity 25% Template c1tdhA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:nei endonuclease viii-like 1; PDBTitle: crystal structure of human endonuclease viii-like 1 (neil1) Resolution 2.10 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.											.	.	.	.	.	.	70	.
Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.	.	.	.
Query Sequence		P	E	L	P	E	V	E	T	S	R	R	G	I	E	P	H	L	V	G	A	T	I	L	H	A	V	V	R	N	G	R	L	R	W	P	V	S	E	E	I	Y	R	L	S	D	Q	P	V	L	S	V	Q	R	R	A	K	Y	L	L	L	E	L	.	.	.	.	.	.	.	.	.	.	P	E	G	W	I	I	I	H
Query Conservation																																																																.	.	.	.	.	.	.	.	.	.
Alig confidence																																									.	.	.																					.	.	.	.	.	.	.	.	.	.
Template Conservation																																									.	.	.
Template Sequence		P	E	G	P	E	L	H	L	A	S	Q	F	V	N	E	A	C	R	A	L	V	F	G	G	C	V	E	K	S	S	V	S	R	N	P	E	V	P	F	.	.	.	E	S	S	A	Y	R	I	S	A	S	A	R	G	K	E	L	R	L	I	L	S	P	L	P	G	A	Q	P	Q	Q	E	P	L	A	L	V	F	R
Template Known Secondary structure																			T	T											S	S			S						.	.	.													T	T										T	T		S	S
Template Predicted Secondary structure																																									.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40				.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.				.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.			.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.																																								.	.
Query SS confidence																												.	.	.																																								.	.
Query Sequence		L	G	M	S	G	S	L	R	I	L	P	E	E	L	P	P	E	K	H	D	H	V	D	L	V	M	.	.	.	S	N	G	K	V	L	R	Y	T	D	P	R	R	F	G	A	W	L	W	T	K	E	L	E	G	H	N	V	L	T	H	L	G	P	E	P	L	S	D	.	.	D	F	N	G	E	Y	L	H	Q	K
Query Conservation																												.	.	.																																								.	.
Alig confidence																		.										.	.	.																									.	.	.	.	.											.	.
Template Conservation																		.																																					.	.	.	.	.
Template Sequence		F	G	M	S	G	S	F	Q	L	V	P	R	E	E	L	P	.	R	H	A	H	L	R	F	Y	T	A	P	P	G	P	R	L	A	L	C	F	V	D	I	R	R	F	G	R	W	D	L	G	G	K	W	Q	.	.	.	.	.	P	G	R	G	P	C	V	L	Q	E	Y	Q	Q	F	R	E	S	V	L	R	N	L
Template Known Secondary structure			T	T	T								G	G	G			.	T	T							B		S	S	S	S									T	T								S	S				.	.	.	.	.	T	T					T	T	T												T	T
Template Predicted Secondary structure																		.																																					.	.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130						.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		147		.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.																.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure			.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		C	.	A	K	K	K	T	A	I	K	P	W	L	M	D	N	K	L	V	V	G	V	G	N	I	Y	A	S	E	S	L	F	A	A	G	I	H	P	D	R	L	A	S	S	L	S	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	C	E	L	L	A	R	V	I	K	A	V	L	L	R	S	I
Query Conservation			.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	D	K	A	F	D	R	P	I	C	E	A	L	L	D	Q	R	F	F	N	G	I	G	N	Y	L	R	A	E	I	L	Y	R	L	K	I	P	P	F	E	K	A	R	S	V	L	E	A	L	Q	P	E	L	T	L	S	Q	K	I	R	T	K	L	Q	N	P	D	L	L	E	L	C	H	S	V	P	K	E	V	V
Template Known Secondary structure		T	S	G	G	G	G	S	B					T	T		T	T	T	S	T	T														T			T	T	S	B						G	G	G				S									T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Q	G	G	T	T	L	K	D	F	L	Q	S	D	G	K	P	G	Y	F	A	Q	E	L	Q	V	Y	G	R	K	G	E	P	C	R	V	C	G	T	P	I	V	A	T	K	H	A	Q	R	A	T	F	Y
Query Conservation
Alig confidence																	.																							.	.	.	.	.	.	.	.
Template Conservation																	.																							.	.	.	.	.	.	.	.
Template Sequence		Q	L	G	G	R	G	Y	G	S	E	S	G	E	E	D	.	F	A	A	F	R	A	W	L	R	C	Y	G	M	P	G	M	S	S	L	Q	D	R	.	.	.	.	.	.	.	.	H	G	R	T	I	W	F
Template Known Secondary structure					T	T		T	T	S	S						.									S	S	T	T		T	T							T	.	.	.	.	.	.	.	.	T	S
Template Predicted Secondary structure																	.																							.	.	.	.	.	.	.	.
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.		.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.									.	.	.	.	.	280	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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