Job Description P05523 Confidence 100.00% Date Wed Jan 25 15:20:11 GMT 2012 Rank 3 Aligned Residues 261 % Identity 37% Template c1nnjA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:formamidopyrimidine-dna glycosylase; PDBTitle: crystal structure complex between the lactococcus lactis fpg and an2 abasic site containing dna Resolution 1.90 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.		.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																						.																													.
Query SS confidence																																						.																													.
Query Sequence		E	L	P	E	V	E	T	S	R	R	G	I	E	P	H	L	V	G	A	T	I	L	H	A	V	V	R	N	G	R	L	R	W	P	V	S	.	E	E	I	Y	R	L	S	D	Q	P	V	L	S	V	Q	R	R	A	K	Y	L	L	L	E	L	P	E	G	.	W	I	I	I	H	L	G	M	S	G	S	L	R	I
Query Conservation																																						.																													.
Alig confidence																																						.																													.
Template Conservation
Template Sequence		E	L	P	E	V	E	T	V	R	R	E	L	E	K	R	I	V	G	Q	K	I	I	S	I	E	A	T	Y	P	R	M	V	L	T	G	F	E	Q	L	K	K	E	L	T	G	K	T	I	Q	G	I	S	R	R	G	K	Y	L	I	F	E	I	G	D	D	F	R	L	I	S	H	L	R	M	E	G	K	Y	R	L
Template Known Secondary structure																		T	T		B							S		G	G	G	B	T	T										T	T		B								T	T							T	T	T								T	T	T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.			.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																														.	.
Query SS confidence																																														.	.
Query Sequence		L	P	E	E	L	P	P	E	K	H	D	H	V	D	L	V	M	S	N	G	K	V	L	R	Y	T	D	P	R	R	F	G	A	W	L	W	T	K	E	L	E	G	H	N	.	.	V	L	T	H	L	G	P	E	P	L	S	D	D	F	N	G	E	Y	L	H	Q	K	C	A	K	K	K	T	A	I	K	P	W	L
Query Conservation																																														.	.
Alig confidence																						.																								.	.
Template Conservation																						.
Template Sequence		A	T	L	D	A	P	R	E	K	H	D	H	L	T	M	K	F	A	D	G	.	Q	L	I	Y	A	D	V	R	K	F	G	T	W	E	L	I	S	T	D	Q	V	L	P	Y	F	L	K	K	K	I	G	P	E	P	T	Y	E	D	F	D	E	K	L	F	R	E	K	L	R	K	S	T	K	K	I	K	P	Y	L
Template Known Secondary structure				T	T					T	T								S	S		.							T	T										G	G	G									T					S	S	T	T	T												T			S	B
Template Predicted Secondary structure																						.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	D	N	K	L	V	V	G	V	G	N	I	Y	A	S	E	S	L	F	A	A	G	I	H	P	D	R	L	A	S	S	L	S	L	A	E	C	E	L	L	A	R	V	I	K	A	V	L	L	R	S	I	E	Q	G	G	T	T	L	K	D	F	L	Q	S	D	G	K	P	G	Y	F	A	Q	E	L	Q	V	Y	G
Query Conservation
Alig confidence																																																															.	.	.	.	.
Template Conservation																																																															.	.	.	.	.
Template Sequence		L	E	Q	T	L	V	A	G	L	G	N	I	Y	V	D	E	V	L	W	L	A	K	I	H	P	E	K	E	T	N	Q	L	I	E	S	S	I	H	L	L	H	D	S	I	I	E	I	L	Q	K	A	I	K	L	G	G	S	S	I	A	L	.	.	.	.	.	G	S	T	G	K	M	Q	N	E	L	Q	V	Y	G
Template Known Secondary structure			T	S	S	S	S	S														T	T			T	T		B	G	G	G																							T	T						T	.	.	.	.	.	T	T	T			G	G	G	S		S	S	T	T
Template Predicted Secondary structure																																																															.	.	.	.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.						.	.	.	.	.	.	.	.	230	.	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	K	G	E	P	C	R	V	C	G	T	P	I	V	A	T	K	H	A	Q	R	A	T	F	Y	C	R	Q	C	Q	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	T	G	E	K	C	S	R	C	G	A	E	I	Q	K	I	K	V	A	G	R	G	T	H	F	C	P	V	C	Q	Q
Template Known Secondary structure			T	T	S	B		T	T	T			B							T	T							T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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