Job Description P05523 Confidence 100.00% Date Wed Jan 25 15:20:11 GMT 2012 Rank 4 Aligned Residues 258 % Identity 41% Template c1ee8A_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:mutm (fpg) protein; PDBTitle: crystal structure of mutm (fpg) protein from thermus thermophilus hb8 Resolution 1.90 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																																																				.
Query SS confidence																																																																				.
Query Sequence		P	E	L	P	E	V	E	T	S	R	R	G	I	E	P	H	L	V	G	A	T	I	L	H	A	V	V	R	N	G	R	L	R	W	P	V	S	E	E	I	Y	R	L	S	D	Q	P	V	L	S	V	Q	R	R	A	K	Y	L	L	L	E	L	P	E	G	W	.	I	I	I	H	L	G	M	S	G	S	L	R	I
Query Conservation																																																																				.
Alig confidence																																				.	.	.	.																													.
Template Conservation																																				.	.	.	.
Template Sequence		P	E	L	P	E	V	E	T	T	R	R	R	L	R	P	L	V	L	G	Q	T	L	R	Q	V	V	H	R	D	P	A	R	Y	R	.	.	.	.	N	T	A	L	A	E	G	R	R	I	L	E	V	D	R	R	G	K	F	L	L	F	A	L	E	G	G	V	E	L	V	A	H	L	G	M	T	G	G	F	R	L
Template Known Secondary structure																			T	T									S		T	T	T			.	.	.	.	S	G	G	G	G	T	T										T	T							T	T	T								T	T	T					S
Template Predicted Secondary structure																																				.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.					.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.			.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.
Query SS confidence																																							.	.
Query Sequence		L	P	E	E	L	P	P	E	K	H	D	H	V	D	L	V	M	S	N	G	K	V	L	R	Y	T	D	P	R	R	F	G	A	W	L	W	T	.	.	K	E	L	E	G	H	N	V	L	T	H	L	G	P	E	P	L	S	D	D	F	N	G	E	Y	L	H	Q	K	C	A	K	K	K	T	A	I	K	P	W	L
Query Conservation																																							.	.
Alig confidence		.	.	.	.	.													.																				.	.
Template Conservation		.	.	.	.	.													.
Template Sequence		.	.	.	.	.	E	P	T	P	H	T	R	A	A	L	V	L	.	E	G	R	T	L	Y	F	H	D	P	R	R	F	G	R	L	F	G	V	R	R	G	D	Y	R	E	I	P	L	L	L	R	L	G	P	E	P	L	S	E	A	F	A	F	P	G	F	F	R	G	L	K	E	S	A	R	P	L	K	A	L	L
Template Known Secondary structure		.	.	.	.	.	S			T	T								.	S	S								T	T										T	T			T	T		T									T	T	S	T	T												T			S	B
Template Predicted Secondary structure		.	.	.	.	.													.
Template SS confidence
							77	.	.	80	.	.	.	.	.	.	.	.		.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.			220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																																																															.	.
Query SS confidence																																																															.	.
Query Sequence		M	D	N	K	L	V	V	G	V	G	N	I	Y	A	S	E	S	L	F	A	A	G	I	H	P	D	R	L	A	S	S	L	S	L	A	E	C	E	L	L	A	R	V	I	K	A	V	L	L	R	S	I	E	Q	G	G	T	T	L	K	D	.	.	F	L	Q	S	D	G	K	P	G	Y	F	A	Q	E	L	Q	V
Query Conservation																																																															.	.
Alig confidence																																																															.	.
Template Conservation
Template Sequence		L	D	Q	R	L	A	A	G	V	G	N	I	Y	A	D	E	A	L	F	R	A	R	L	S	P	F	R	P	A	R	S	L	T	E	E	E	A	R	R	L	Y	R	A	L	R	E	V	L	A	E	A	V	E	L	G	G	S	T	L	S	D	Q	S	Y	R	Q	P	D	G	L	P	G	G	F	Q	T	R	H	A	V
Template Known Secondary structure				S	S	S	S	T	T													T	T			S	S	S	B	G	G	G																							T	T					S	S						T	T	S				S		G	G	G		S	S
Template Predicted Secondary structure
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	G	R	K	G	E	P	C	R	V	C	G	T	P	I	V	A	T	K	H	A	Q	R	A	T	F	Y	C	R	Q	C	Q	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	G	R	E	G	L	P	C	P	A	C	G	R	P	V	E	R	R	V	V	A	G	R	G	T	H	F	C	P	T	C	Q	G
Template Known Secondary structure		T	T		T	T	S	B		T	T	T			B						S	S	S							T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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