Job Description P0AE67 Confidence 24.85% Date Thu Jan 5 11:22:39 GMT 2012 Rank 376 Aligned Residues 96 % Identity 13% Template c2j37W_ PDB info PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs Resolution 8.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		4	.	.	.	.	.	10	.	.	.	.				.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.								.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure													.	.	.																									.	.	.	.	.	.	.
Query SS confidence													.	.	.																									.	.	.	.	.	.	.
Query Sequence		K	E	L	K	F	L	V	V	D	D	F	.	.	.	S	T	M	R	R	I	V	R	N	L	L	K	E	L	G	F	N	N	V	E	E	A	E	D	.	.	.	.	.	.	.	G	V	D	A	L	N	K	L	Q	A	G	G	Y	G	F	V	I	S	D	W	N	M	P	N	M	D	G	L	E	L	L	K	T	I	R
Query Conservation													.	.	.																									.	.	.	.	.	.	.
Alig confidence													.	.	.																	.								.	.	.	.	.	.	.
Template Conservation																																.
Template Sequence		K	G	W	K	T	C	L	I	C	A	D	T	F	R	A	G	A	F	D	Q	L	K	Q	N	A	T	K	A	R	I	.	P	F	Y	G	S	Y	T	E	M	D	P	V	I	I	A	S	E	G	V	E	K	F	K	N	E	N	F	E	I	I	I	V	D	T	S	G	R	H	K	Q	E	D	S	L	F	E	E	M	L
Template Known Secondary structure		T	T											S	S	S														T		.									S																T	T													T	T
Template Predicted Secondary structure																																.
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.		.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		74			.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure			.	.
Query SS confidence			.	.
Query Sequence		A	.	.	D	G	A	M	S	A	L	P	V	L	M	V	T	A	E	A	K	K	E	N	I	I	A	A	A	Q
Query Conservation			.	.
Alig confidence			.	.
Template Conservation
Template Sequence		Q	V	A	N	A	I	Q	P	D	N	I	V	Y	V	M	D	A	S	I	G	Q	A	C	E	A	Q	A	K	A
Template Known Secondary structure										S								T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions