Job Description P0AE67 Confidence 22.05% Date Thu Jan 5 11:22:39 GMT 2012 Rank 398 Aligned Residues 105 % Identity 13% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.				.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.								40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.			.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure														.	.	.																										.	.	.	.	.	.	.																			.	.
Query SS confidence														.	.	.																										.	.	.	.	.	.	.																			.	.
Query Sequence		D	K	E	L	K	F	L	V	V	D	D	F	.	.	.	S	T	M	R	R	I	V	R	N	L	L	K	E	L	G	F	N	N	V	E	E	A	E	D	G	.	.	.	.	.	.	.	V	D	A	L	N	K	L	Q	A	G	G	Y	G	F	V	I	S	D	.	.	W	N	M	P	N	M	D	G	L	E	L	L	K
Query Conservation														.	.	.																										.	.	.	.	.	.	.																			.	.
Alig confidence														.	.	.																	.									.	.	.	.	.	.	.																			.	.
Template Conservation																																	.
Template Sequence		K	R	G	Y	K	V	G	L	V	A	A	D	V	Y	R	P	A	A	Y	D	Q	L	L	Q	L	G	N	Q	I	G	V	.	Q	V	Y	G	E	P	N	N	Q	N	P	I	E	I	A	K	K	G	V	D	I	F	V	K	N	K	M	D	I	I	I	V	D	T	A	G	R	H	G	Y	G	E	E	T	K	L	L	E
Template Known Secondary structure		T	T	S					B						S	S	S		S											T	T		.						S	S				T	T													T	T		S									S			S	S	T
Template Predicted Secondary structure																																	.
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.		.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
		71	.	.	.			.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100					.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.																											.	.	.	.
Query SS confidence						.	.																											.	.	.	.
Query Sequence		T	I	R	A	.	.	D	G	A	M	S	A	L	P	V	L	M	V	T	A	E	A	K	K	E	N	I	I	A	A	A	Q	.	.	.	.	A	G	A	S	G	Y	V	V
Query Conservation						.	.																											.	.	.	.
Alig confidence						.	.																											.	.	.	.
Template Conservation
Template Sequence		E	M	K	E	M	Y	D	V	L	K	P	D	D	V	I	L	V	I	D	A	S	I	G	Q	K	A	Y	D	L	A	S	R	F	H	Q	A	S	P	I	G	S	V	I	I
Template Known Secondary structure													S								T	T	T	G	G	G	G									T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions