Job Description P07003 Confidence 97.22% Date Thu Jan 5 10:59:55 GMT 2012 Rank 102 Aligned Residues 237 % Identity 11% Template c3dufD_ PDB info PDB header:oxidoreductase/transferase Chain: D: PDB Molecule:pyruvate dehydrogenase e1 component subunit beta; PDBTitle: snapshots of catalysis in the e1 subunit of the pyruvate2 dehydrogenase multi-enzyme complex Resolution 2.50 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.				.	.	.	.	20	.	.	.	.	.	.	.	.									.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure																.	.	.														.	.	.	.	.	.	.	.
Query SS confidence																.	.	.														.	.	.	.	.	.	.	.
Query Sequence		K	Q	T	V	A	A	Y	I	A	K	T	L	E	S	.	.	.	A	G	V	K	R	I	W	G	V	T	G	D	S	.	.	.	.	.	.	.	.	L	N	G	L	S	D	S	L	N	R	M	G	T	I	E	W	M	S	T	R	H	E	E	V	A	A	F	A	A	G	A	E	A	Q	L	S	G	E	L	A	V	C
Query Conservation																.	.	.														.	.	.	.	.	.	.	.
Alig confidence																.	.	.														.	.	.	.	.	.	.	.																	.	.																						.
Template Conservation																																																								.	.																						.
Template Sequence		Q	M	T	M	V	Q	A	I	T	D	A	L	R	I	E	L	K	N	D	P	N	V	L	I	F	G	E	D	V	G	V	N	G	G	V	F	R	A	T	E	G	L	Q	A	E	F	G	E	D	R	V	F	D	T	.	.	P	L	A	E	S	G	I	G	G	L	A	I	G	L	A	L	Q	G	F	R	P	.	V	P
Template Known Secondary structure																					T	T						T	T		S	T	T			T	T	S	T	T	T	T							T	T	T					.	.		S															T	T				.
Template Predicted Secondary structure																																																								.	.																						.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.			.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.		.	.
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90										.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.		.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.																																						.
Query SS confidence																						.	.	.	.	.	.	.	.	.																																						.
Query Sequence		A	G	S	C	G	P	G	N	L	H	L	I	N	G	L	F	D	C	H	R	.	.	.	.	.	.	.	.	.	N	H	V	P	V	L	A	I	A	A	H	I	P	S	S	E	I	G	S	G	Y	F	Q	E	T	H	P	Q	E	L	F	R	E	C	S	H	Y	.	C	E	L	V	S	S	P	E	Q	I	P	Q	V
Query Conservation																						.	.	.	.	.	.	.	.	.																																						.
Alig confidence																						.	.	.	.	.	.	.	.	.															.	.																						.
Template Conservation																																													.	.
Template Sequence		E	I	Q	F	F	G	F	V	Y	E	V	M	D	S	I	C	G	Q	M	A	R	I	R	Y	R	T	G	G	R	Y	H	M	P	I	T	I	R	S	P	F	G	G	G	.	.	V	H	T	P	E	L	H	S	D	S	L	E	G	L	V	A	Q	Q	P	G	L	K	V	V	I	P	S	T	P	Y	D	A	K	G	L
Template Known Secondary structure				S	S	G	G	G	G	G	G	G							T	T	T	T					T	T	T	S	S													S	.	.	S				T	T	S	S								T	T	S	T	T								S
Template Predicted Secondary structure																																													.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.			.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	I	A	M	R	K	A	V	L	N	R	G	V	S	V	V	V	L	P	G	D	V	A	L	K	P	A	P	E	G	A	T	M	H	W	Y	H	A	P	Q	P	V	V	T	P	E	E	E	E	L	R	K	L	A	Q	L	L	R	Y	S	S	N	I	A	L	M	C	G	S	G	C	A	G	A	H	K	E	L	V
Query Conservation
Alig confidence								.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	I	S	A	I	R	.	.	.	.	D	N	D	P	V	I	F	L	E	H	L	K	L	Y	R	S	F	R	Q	E	V	P	E	G	E	Y	T	I	P	I	G	K	A	D	I	.	.	.	.	.	.	.	.	.	.	.	.	K	R	E	G	K	D	I	T	I	I	A	Y	G	A	M	V	H	E	S	L	K	A	A
Template Known Secondary structure								.	.	.	.	S	S	S								T	T	T	T	T	S							S	S						T	T					.	.	.	.	.	.	.	.	.	.	.	.					S	S							T	T
Template Predicted Secondary structure								.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		157	.	.	160	.	.					.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.													.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	F	A	G	K	I	K	A	P	I	V	H	A	L	R	G	K	E	H	V	E	Y	D	N	P	Y	D	V	G	M	T	G	L	I	G	F	S	S	G	F	H	T	M	M	N	A	D	T	L	V	L	L
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	E	L	E	K	E	G	I	S	A	E	V	.	.	.	.	.	.	.	.	.	.	.	.	.	V	D	L	R	T	V	Q	P	L	D	I	E	T	I	I	G	S	V	E	K	T	G	R	A	I	V	V
Template Known Secondary structure						T	T	T						.	.	.	.	.	.	.	.	.	.	.	.	.				S				S														S
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.														.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions