Job Description P07003 Confidence 100.00% Date Thu Jan 5 10:59:55 GMT 2012 Rank 15 Aligned Residues 546 % Identity 13% Template c2x7jA_ PDB info PDB header:transferase Chain: A: PDB Molecule:2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene PDBTitle: structure of the menaquinone biosynthesis protein mend from2 bacillus subtilis Resolution 2.35 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	A	A	Y	I	A	K	T	L	E	S	A	G	V	K	R	I	W	G	V	T	G	D	S	L	N	G	L	S	D	S	L	N	R	M	G	T	I	E	W	M	S	T	R	H	E	E	V	A	A	F	A	A	G	A	E	A	Q	L	S	G	E	L	A	V	C	A	G	S	C	G	P	G	N	L	H	L	I	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	Y	I	G	S	F	I	D	E	F	A	L	S	G	I	T	D	A	V	V	C	P	G	S	R	S	T	P	L	A	V	L	C	A	A	H	P	D	I	S	V	H	V	Q	I	D	E	R	S	A	G	F	F	A	L	G	L	A	K	A	K	Q	R	P	V	L	L	I	C	T	S	G	T	A	A	A	N	F	Y	P
Template Known Secondary structure															T										S	T	T											T	T							S	S																T	S								S	S					T	T
Template Predicted Secondary structure
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.								.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.		.	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.																						.
Query SS confidence																																																		.	.	.	.	.	.	.																						.
Query Sequence		G	L	F	D	C	H	R	N	H	V	P	V	L	A	I	A	A	H	I	P	S	S	E	I	G	S	G	Y	F	Q	E	T	H	P	Q	E	L	F	R	E	C	S	H	Y	C	E	L	V	.	.	.	.	.	.	.	S	S	P	E	Q	I	P	Q	V	L	A	I	A	M	R	K	A	V	L	N	R	.	G	V	S
Query Conservation																																																		.	.	.	.	.	.	.																						.
Alig confidence																																																		.	.	.	.	.	.	.																						.
Template Conservation
Template Sequence		A	V	V	E	A	H	Y	S	R	V	P	I	I	V	L	T	A	D	R	P	H	E	L	R	E	V	G	A	P	Q	A	I	N	Q	H	F	L	F	G	N	F	V	K	F	F	T	D	S	A	L	P	E	E	S	P	Q	M	L	R	Y	I	R	T	L	A	S	R	A	A	G	E	A	Q	K	R	P	M	G	P	V
Template Known Secondary structure										T												G	G	G	S	S	S			T	T					T	T	T	T	G	G	G	S	S											S																				S	S	S
Template Predicted Secondary structure
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		156	.	.	.	160	.	.	.	.							.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.		.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.																																																		.
Query SS confidence											.	.	.	.	.	.																																																		.
Query Sequence		V	V	V	L	P	G	D	V	A	.	.	.	.	.	.	L	K	P	A	P	E	G	A	T	M	H	W	Y	H	A	P	Q	P	V	V	T	P	E	E	E	E	L	R	K	L	A	Q	L	L	R	Y	S	S	N	I	A	L	M	C	G	S	G	C	A	.	G	A	H	K	E	L	V	E	F	A	G	K	I	K	A
Query Conservation											.	.	.	.	.	.																																																		.
Alig confidence											.	.	.	.	.	.																																																		.
Template Conservation
Template Sequence		H	V	N	V	P	L	R	E	P	L	M	P	D	L	S	D	E	P	F	G	R	M	R	T	G	R	H	V	S	V	K	T	G	T	Q	S	V	D	R	E	S	L	S	D	V	A	E	M	L	A	E	A	E	K	G	M	I	V	C	G	E	L	H	S	D	A	D	K	E	N	I	I	A	L	S	K	A	L	Q	Y
Template Known Secondary structure									S						T	T	S		T	T			S	S	S	S		S	S											T	G	G	G											S	S																									T
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		229	230	.	.	.	.	.	.		.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.						.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure										.																																														.	.	.	.	.
Query SS confidence										.																																														.	.	.	.	.
Query Sequence		P	I	V	H	A	L	R	G	.	K	E	H	V	E	Y	D	N	P	Y	D	V	G	M	T	G	L	I	G	F	S	S	G	F	H	T	M	M	N	A	D	T	L	V	L	L	G	T	Q	F	P	Y	R	A	F	.	.	.	.	.	Y	P	T	D	A	K	I	I	Q	I	D	I	N	P	A	S	I	G	A	H	S
Query Conservation										.																																														.	.	.	.	.
Alig confidence										.																																														.	.	.	.	.
Template Conservation
Template Sequence		P	I	L	A	D	P	L	S	N	L	R	N	G	V	H	D	K	S	T	V	I	D	A	Y	D	S	F	L	K	D	D	E	L	K	R	K	L	R	P	D	V	V	I	R	F	G	P	M	P	V	S	K	P	V	F	L	W	L	K	D	D	P	T	I	Q	Q	I	V	I	D	E	D	G	G	W	R	D	P	T	Q
Template Known Secondary structure							G	G	G	T	T	T	B	S	S	S			T	T									T	T	S										S						S	S			S												T	T	S							T	T						T	T	S
Template Predicted Secondary structure
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	D	M	A	L	V	G	D	I	K	S	T	L	R	A	L	L	P	L	V	E	E	K	A	D	R	K	F	L	D	K	A	L	E	D	Y	R	D	A	R	K	G	L	D	D	L	A	K	P	S	E	K	A	I	H	P	Q	Y	L	A	Q	Q	I	S	H	F	A	A	D	D	A	I	F	T	C	D	V	G	T
Query Conservation
Alig confidence																																																				.
Template Conservation																																																				.
Template Sequence		A	S	A	H	M	I	H	C	N	A	S	V	F	A	E	E	I	M	A	G	L	T	A	A	T	R	S	S	E	W	L	E	K	W	Q	F	V	N	G	R	F	R	E	H	L	Q	T	I	S	S	.	E	D	V	S	F	E	G	N	L	Y	R	I	L	Q	H	L	V	P	E	N	S	S	L	F	V	G	N	S	M
Template Known Secondary structure				S					S												T	S		S	S																							T	S			.			T	T	S												S		T	T							T	T
Template Predicted Secondary structure																																																				.
Template SS confidence
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.		.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
		383	.	.	.	.	.	.	390	.	.		.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		P	T	V	W	A	A	R	Y	L	K	.	M	N	G	K	R	R	L	L	G	S	F	N	H	G	S	M	A	N	A	M	P	Q	A	L	G	A	Q	A	T	E	P	E	R	Q	V	V	A	M	C	G	D	G	G	F	S	M	L	M	G	D	F	L	S	V	V	Q	M	K	L	P	V	K	I	V	V	F	N	N	S
Query Conservation												.
Alig confidence												.																														.
Template Conservation																																										.
Template Sequence		P	I	R	D	V	D	T	F	F	E	K	Q	D	R	P	F	R	I	Y	S	N	R	G	A	N	G	I	D	G	V	V	S	S	A	M	G	V	C	E	G	.	T	K	A	P	V	T	L	V	I	G	D	L	S	F	Y	H	D	L	N	G	L	L	A	A	K	K	L	G	I	P	L	T	V	I	L	V	N	N	D
Template Known Secondary structure													B	S									T	T	T			S	S	S												.		T	S														T	G	G	G	G																		S
Template Predicted Secondary structure																																										.
Template SS confidence
		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.		.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.
		462	.	.	.	.	.	.	.	470	.	.	.	.	.				.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.
Query SS confidence																.	.	.
Query Sequence		V	L	G	F	V	A	M	E	M	K	A	G	G	Y	.	.	.	L	T	D	G	T	E	L	H	D	T	N	F	A	R	I	A	E	A	C	G	I	T	G	I	R	V	E	K	A	S	E	V	D	E	A	L	Q	R	A	F	S	I	D	G	P	V	L	V	D	V	V	V	A	K	E	E	L	A	I	P	P	Q	I
Query Conservation																.	.	.
Alig confidence																.	.	.																																																											.	.	.
Template Conservation																																																																													.	.	.
Template Sequence		G	G	G	I	F	S	F	L	P	Q	A	S	E	K	T	H	F	E	D	L	F	G	T	P	T	G	L	D	F	K	H	A	A	A	L	Y	G	G	T	Y	S	C	P	A	S	W	D	E	F	K	T	A	Y	A	P	Q	A	D	K	P	G	L	H	L	I	E	I	K	T	D	R	Q	S	R	V	.	.	.	Q	L
Template Known Secondary structure		S		G	G	G	G	G	S	G	G	G	S									T	T							T							T	T							S	S													S	S																	.	.	.
Template Predicted Secondary structure																																																																													.	.	.
Template SS confidence
		486	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560				.	.
		539	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	E	Q	A	K	G	F	S	L	Y	M	L	R	A	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	R	D	M	L	N	E	A	V	R	E	V	K	K	Q	W
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		563	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.