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Job DescriptionP07003
Confidence100.00%DateThu Jan 5 10:59:55 GMT 2012
Rank21Aligned Residues518
% Identity19%Templatec2nxwB_
PDB info PDB header:lyaseChain: B: PDB Molecule:phenyl-3-pyruvate decarboxylase; PDBTitle: crystal structure of phenylpyruvate decarboxylase of azospirillum2 brasilense
Resolution1.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70.........80.
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Query Sequence  KQTVAAYIAKTLESAGVKRIWGVTGDSLNGLSDSLNRMGTIEWMSTRHEEVAAFAAGAEAQLSGELAVCAGSCGPGNLHL
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Template Sequence  HMKLAEALLRALKDRGAQAMFGIPGDFALPFFKVAEETQILPLHTLSHEPAVGFAADAAARYSSTLGVAAVTYGAGAFNM
Template Known Secondary structure 
TT





GGG
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TTTT
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   0.........10.........20.........30.........40.........50.........60.........70.........
 
   82.......90.........100.........110.........120.........130.........140.........150.........160.
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Query Sequence  INGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAVLNRGVSVVVLPG
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Template Sequence  VNAVAGAYAEKSPVVVISGAPGTTELLDTQFQ. . . . . . VFKEITVAQARLDDPAKAPAEIARVLGAARAQSRPVYLEIPR
Template Known Secondary structure  TT



TT



......TT
S



TTTTS
G
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   80.........90.........100.........110. ........120.........130.........140.........150...
 
   162.......170.........180.........190.........200.........210... ......220.........230.........
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Query Sequence  DVALKPAPEGATMHWYHAPQPVVTPEEEELRKLAQLLRYSSNIALMCGSGCA. . GAHKELVEFAGKIKAPIVHALRGKEH
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Template Sequence  NMVNAEV. . . EPVGDDPAWPVDRDALAACADEVLAAMRSATSPVLMVCVEVRRYGLEAKVAELAQRLGVPVVTTFMGRGL
Template Known Secondary structure  GGTT
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SS
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S

GGGTTT
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   166...170.. .......180.........190.........200.........210.........220.........230.........240..
 
   240.........250 .........260.........270.........280. ........290.........300.........310...
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Query Sequence  VEYDNPYDVGM. TGLIGFSSGFHTMMNADTLVLLGTQFPYRAF. . . . . YPTDAKIIQIDINPASIGAHSKVDMALVGDIK
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Template Sequence  LADAPTPPLGTYIGVAGDAEITRLVEESDGLFLLGAILSDTNFAVSQRKIDLRKTIHAFDRAVTLGYHTYADIPLAGLVD
Template Known Secondary structure  TTTSSS

S
B

GGGS
T
SS

B
SSTTSB
GGGS
TTT
TTTT
S

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   243......250.........260.........270.........280.........290.........300.........310.........320..
 
   314.....320.........330.........340.........350.........360.........370.........380.........390...
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Query Sequence  STLRALLPLVEEKADRKFLDKALEDYRDARKGLDDLAKPSEKAIHPQYLAQQISHFAADDAIFTCDVGTPTVWAARYLKM
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Template Sequence  ALLERLPPSDRTTRGKEPH. . . . . . . . . AYPTGLQADGEPIAPMDIARAVNDRVRAGQEPLLIAADMGDCLFTAMDMI. .
Template Known Secondary structure  TTS






TTS


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SSSB

TT




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   323......330.........340. ........350.........360.........370.........380.........390.
 
   394.....400.........410.........420.........430.........440.........450.........460.........470...
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Query Sequence  NGKRRLLGSFNHGSMANAMPQALGAQATEPERQVVAMCGDGGFSMLMGDFLSVVQMKLPVKIVVFNNSVLGFVAMEMKAG
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Template Sequence  . . DAGLMAPGYYAGMGFGVPAGIGAQCVSGGKRILTVVGDGAFQMTGWELGNCRRLGIDPIVILFNNASWEMLRTFQP. .
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S


TTT

TT
STT

GGGGGGT



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   392.......400.........410.........420.........430.........440.........450.........460.......
 
   474.....480.........490.........500.........510......... 520.........530.........540.........550..
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Query Sequence  GYLTDGTELHDTNFARIAEACGITGIRVEKASEVDEALQRAFSIDG. PVLVDVVVAKEELAIPPQIKLEQAKGFSLYMLR
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Template Sequence  . . ESAFNDLDDWRFADMAAGMGGDGVRVRTRAELKAALDKAFATRGRFQLIEAMIPRGVLS. . . . . . . DTLARFVQGQKR
Template Known Secondary structure  ..T
GGGB




GGGT

B

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TT


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   468.470.........480.........490.........500.........510.........520...... ...530........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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