Job Description P07003 Confidence 60.69% Date Thu Jan 5 10:59:55 GMT 2012 Rank 140 Aligned Residues 67 % Identity 18% Template c2j37W_ PDB info PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs Resolution 8.00 Å

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		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.		.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		L	A	Q	L	L	R	Y	S	S	N	I	A	L	M	C	G	S	G	C	A	.	G	A	H	K	E	L	V	E	F	A	G	K	I	K	A	P	I	V	H	A	L	R	G	K	E	H	V	E	Y	D	N	P	Y	D	V	G	M	T	G	L	I	G	F	S	S	G	F	H	T	M	M	N	A	D	T	L	V	L
Query Conservation																						.
Alig confidence																						.																			.	.	.	.	.	.												.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.												.	.	.	.	.
Template Sequence		A	Y	Y	Y	Q	R	K	G	W	K	T	C	L	I	C	A	D	T	F	R	A	G	A	F	D	Q	L	K	Q	N	A	T	K	A	R	I	P	F	Y	.	.	.	.	.	.	G	S	Y	T	E	M	D	P	V	I	I	.	.	.	.	.	A	S	E	G	V	E	K	F	K	N	E	N	F	E	I	I	I	V
Template Known Secondary structure								T	T											S	S	S														T					.	.	.	.	.	.						S						.	.	.	.	.											T	T
Template Predicted Secondary structure																																									.	.	.	.	.	.												.	.	.	.	.
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160							.	.	.	.	.	.	.	.	.	170	.						.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions