Return to main results Retrieve Phyre Job Id

Job DescriptionP07003
Confidence97.95%DateThu Jan 5 10:59:55 GMT 2012
Rank90Aligned Residues249
% Identity12%Templatec2bp7F_
PDB info PDB header:oxidoreductaseChain: F: PDB Molecule:2-oxoisovalerate dehydrogenase beta subunit; PDBTitle: new crystal form of the pseudomonas putida branched-chain2 dehydrogenase (e1)
Resolution2.9 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1... .....10.........20... ......30......... 40.........50.........60.........70...
Predicted Secondary structure 



..



....





.







Query SS confidence 



. .


















. . . .















.

































Query Sequence  MKQT. . VAAYIAKTLESAGVKRIWG. . . . VTGDSLNGLSDSLNRM. GTIEWMSTRHEEVAAFAAGAEAQLSGELAVCAGS
Query Conservation 
  
.. 

 
   
   

  


.... 

     
  

   .  
  
    
  
   
 
 

 

   

  
Alig confidence 



..


















....















.



























.




Template Conservation       
    
      
  

    
     
       
     
 
  
 



   

 




  
  
.

   
Template Sequence  MTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTAVGMGAYGLRP. VVEIQ
Template Known Secondary structure 


TTTT
SSS

TTSTTTT
TTT

S
T
.
S
Template Predicted Secondary structure 

























.
Template SS confidence 















































































   6...10.........20.........30.........40.........50.........60.........70......... 80....
 
   74.....80.........90 .........100.........110.........120.... .....130.........140...
Predicted Secondary structure 

.........
















.




Query SS confidence 
















. . . . . . . . .

































.


















Query Sequence  CGPGNLHLINGLFDCHR. . . . . . . . . NHVPVLAIAAHIPSSEIGSGYFQETHPQELFREC. SHYCELVSSPEQIPQVLAI
Query Conservation   


  
    
  
  .........   


 
 
            
  
   
    . 
          
   
  
Alig confidence 
















.........













..

















.


















Template Conservation     
  

 


    
             

     
  ..   
  
   
 
    



 
  


  

   
  
Template Sequence  FADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGGG. . IYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIA
Template Known Secondary structure 
GGG
GGGTTTTTTTTSS





S..SS

TTSS


TTSTT



S
Template Predicted Secondary structure 











..











Template SS confidence 















































































   85....90.........100.........110.........120.... .....130.........140.........150.........160..
 
   144.....150.........160.........170.........180.........190..... ....200........ .210........
Predicted Secondary structure 



























....


.



Query SS confidence 



















































. . . .












.









Query Sequence  AMRKAVLNRGVSVVVLPGDVALKPAPEGATMHWYHAPQPVVTPEEEELRKLA. . . . QLLRYSSNIALMC. GSGCAGAHKE
Query Conservation 
   
    


 
 

 

                                ....  
  






 .
 
   
   
Alig confidence 


....












































....












.









Template Conservation 
  ....   

 

                                      
   
   
 

 


 
  
  

 
Template Sequence  SIE. . . . CDDPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPHSAVPDGYYTVPLDKAAITRPGNDVSVLTYGTTVYVAQVA
Template Known Secondary structure  ....
SS
GGGSSS


S
SSS



GGGSTT
SS




TT



SS
TT
Template Predicted Secondary structure  ....









































Template SS confidence 















































































   163.. ....170.........180.........190.........200.........210.........220.........230........
 
   219220.........230.........240.........250.........260.........270...
Predicted Secondary structure 
































Query SS confidence 






















































Query Sequence  LVEFAGKIKAPIVHALRGKEHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLVLLG
Query Conservation 
  


    

  
    
     

   
  
          
   
 

 

Alig confidence 



..






...............


























Template Conservation 

  ..

 
 

...............    
 


   
         




Template Sequence  AEES. . GVDAEVI. . . . . . . . . . . . . . . DLRSLWPLDLDTIVESVKKTGRCVVVH
Template Known Secondary structure  ..


...............
SS

S
Template Predicted Secondary structure 
..


...............







Template SS confidence 






















































   239240.. ....... 250.........260.........270......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions