Job Description P07003 Confidence 96.96% Date Thu Jan 5 10:59:55 GMT 2012 Rank 106 Aligned Residues 240 % Identity 16% Template c1um9D_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:2-oxo acid dehydrogenase beta subunit; PDBTitle: branched-chain 2-oxo acid dehydrogenase (e1) from thermus2 thermophilus hb8 in apo-form Resolution 2.20 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.					.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.		.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.																								.
Query SS confidence																									.	.	.	.																								.
Query Sequence		M	K	Q	T	V	A	A	Y	I	A	K	T	L	E	S	A	G	V	K	R	I	W	G	.	.	.	.	V	T	G	D	S	L	N	G	L	S	D	S	L	N	R	M	G	T	I	E	W	M	S	.	T	R	H	E	E	V	A	A	F	A	A	G	A	E	A	Q	L	S	G	E	L	A	V	C	A	G	S	C	G
Query Conservation																									.	.	.	.																								.
Alig confidence																									.	.	.	.																								.																		.
Template Conservation																																																																						.
Template Sequence		M	V	Q	A	L	N	R	A	L	D	E	E	M	A	K	D	P	R	V	V	V	L	G	E	D	V	G	K	R	G	G	V	F	L	V	T	E	G	L	L	Q	K	Y	G	P	D	R	V	M	D	T	P	L	S	E	A	A	I	V	G	A	A	L	G	M	A	A	H	.	G	L	R	P	V	A	E	I	Q	F	A
Template Known Secondary structure																		T	T						T	T		S	S	S			T	T	S	T	T	T	T							T	T	T						S																.	T								S		G
Template Predicted Secondary structure																																																																						.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.										90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.		.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.																																				.
Query SS confidence																.	.	.	.	.	.	.	.	.																																				.
Query Sequence		P	G	N	L	H	L	I	N	G	L	F	D	C	H	.	.	.	.	.	.	.	.	.	R	N	H	V	P	V	L	A	I	A	A	H	I	P	S	S	E	I	G	S	G	Y	F	Q	E	T	H	P	Q	E	L	F	R	E	C	.	S	H	Y	C	E	L	V	S	S	P	E	Q	I	P	Q	V	L	A	I	A	M
Query Conservation																.	.	.	.	.	.	.	.	.																																				.
Alig confidence																.	.	.	.	.	.	.	.	.															.	.																				.
Template Conservation																																							.	.
Template Sequence		D	Y	I	F	P	G	F	D	Q	L	V	S	Q	V	A	K	L	R	Y	R	S	G	G	Q	F	T	A	P	L	V	V	R	M	P	S	G	G	.	.	G	V	R	G	G	H	H	H	S	Q	S	P	E	A	H	F	V	H	T	A	G	L	K	V	V	A	V	S	T	P	Y	D	A	K	G	L	L	K	A	A	I
Template Known Secondary structure		G	G	G	G	G	G							T	T	T	T					T	T	T	S	S													.	.	S	S				S	S	S	S									T	S	T	T								S
Template Predicted Secondary structure																																							.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.			.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	K	A	V	L	N	R	G	V	S	V	V	V	L	P	G	D	V	A	L	K	P	A	P	E	G	A	T	M	H	W	Y	H	A	P	Q	P	V	V	T	P	E	E	E	E	L	R	K	L	A	Q	L	L	R	Y	S	S	N	I	A	L	M	C	G	S	G	C	A	G	A	H	K	E	L	V	E	F	A	G	K
Query Conservation
Alig confidence			.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	.	.	.	.	D	E	D	P	V	V	F	L	E	P	K	R	L	Y	R	S	V	K	E	E	V	P	E	E	D	Y	T	L	P	I	G	K	A	A	L	.	.	.	.	.	.	.	.	.	.	.	.	R	R	E	G	K	D	L	T	L	I	C	Y	G	T	V	M	P	E	V	L	Q	A	A	A	E	L	A	K
Template Known Secondary structure			.	.	.	.		S	S								G	G	G	S	S	S							S	S						T	T					.	.	.	.	.	.	.	.	.	.	.	.					S	S							G	G	G
Template Predicted Secondary structure			.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		163					.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.													.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	K	A	P	I	V	H	A	L	R	G	K	E	H	V	E	Y	D	N	P	Y	D	V	G	M	T	G	L	I	G	F	S	S	G	F	H	T	M	M	N	A	D	T	L	V	L	L
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	G	V	S	A	E	V	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	L	R	T	L	M	P	W	D	Y	E	A	V	M	N	S	V	A	K	T	G	R	V	V	L	V
Template Known Secondary structure		T	T						.	.	.	.	.	.	.	.	.	.	.	.	.								T														S
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		227	.	.	230	.	.	.														.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions